Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   QN310_RS01235 Genome accession   NZ_CP128411
Coordinates   209899..211266 (+) Length   455 a.a.
NCBI ID   WP_016742863.1    Uniprot ID   -
Organism   Brevibacillus brevis strain HNCS-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 204899..216266
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN310_RS01215 (QN310_01215) - 205189..205653 (+) 465 WP_064202944.1 CtsR family transcriptional regulator -
  QN310_RS01220 (QN310_01220) - 205670..206188 (+) 519 WP_012683955.1 UvrB/UvrC motif-containing protein -
  QN310_RS01225 (QN310_01225) - 206208..207281 (+) 1074 WP_172143232.1 protein arginine kinase -
  QN310_RS01230 (QN310_01230) - 207342..209792 (+) 2451 WP_016742864.1 ATP-dependent Clp protease ATP-binding subunit -
  QN310_RS01235 (QN310_01235) radA 209899..211266 (+) 1368 WP_016742863.1 DNA repair protein RadA Machinery gene
  QN310_RS01240 (QN310_01240) disA 211275..212351 (+) 1077 WP_012683959.1 DNA integrity scanning diadenylate cyclase DisA -
  QN310_RS01245 (QN310_01245) pssA 212466..213194 (+) 729 WP_017247027.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  QN310_RS01250 (QN310_01250) - 213292..213687 (-) 396 WP_007716195.1 hypothetical protein -
  QN310_RS01255 (QN310_01255) - 213974..215062 (+) 1089 WP_012683961.1 PIN/TRAM domain-containing protein -
  QN310_RS01260 (QN310_01260) ispD 215090..215776 (+) 687 WP_289675569.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  QN310_RS01265 (QN310_01265) ispF 215783..216256 (+) 474 WP_289675570.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49471.85 Da        Isoelectric Point: 6.8250

>NTDB_id=847354 QN310_RS01235 WP_016742863.1 209899..211266(+) (radA) [Brevibacillus brevis strain HNCS-1]
MSKYKTKYACQECGYESPKWMGKCPGCSSWNTLVEEVTVKNPHRHEGMSGGQRQSAIPLTQVASEEEPRMDTTIGELNRV
LGGGLVPGSLILVGGDPGIGKSTLLLQTSFALAHQGAKVLYVSGEESAKQIKIRADRLHLQTPPMFVLAENDLDLIEQHI
NQVDPDVLIIDSIQTVFHPTIQSAAGSVAQVREATAQLMRIAKGKGIGTFIVGHVTKEGSIAGPRMLEHMVDAVLYFEGE
RHNTFRILRAVKNRFGSTNEIGIFEMKDRGLEEVANPSEIFLAERPFGVAGSTVVASMEGTRPVLVELQALVAPTSFVTP
RRTATGVDHQRVAMIMAVLEKRMGMMLQNQDAYVNVAGGVRLDEPAVDLAIAVSIASSFRDHATNPHDVVIGEIGLTGEV
RGVSRIEQRVREAHKLGFKRVIIPEKNIRGLDAPADIQVIGVSNIADALNEVIRR

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=847354 QN310_RS01235 WP_016742863.1 209899..211266(+) (radA) [Brevibacillus brevis strain HNCS-1]
ATGTCAAAGTATAAAACGAAATACGCGTGTCAAGAATGTGGCTATGAATCGCCAAAATGGATGGGGAAATGTCCGGGATG
CAGCAGTTGGAACACCCTGGTAGAGGAAGTGACGGTAAAAAATCCACATCGTCACGAAGGGATGAGCGGCGGCCAGCGTC
AATCTGCGATTCCGTTGACCCAGGTAGCTAGTGAGGAAGAGCCACGCATGGATACCACGATCGGAGAATTGAATCGTGTT
CTTGGTGGAGGACTTGTTCCGGGTTCACTCATTTTGGTTGGGGGAGACCCTGGAATCGGGAAATCGACATTGCTTTTGCA
AACTTCTTTTGCCTTGGCTCATCAAGGAGCGAAGGTTCTCTATGTATCTGGAGAGGAGTCGGCAAAACAAATCAAAATTC
GCGCGGATCGACTCCATTTGCAAACGCCGCCGATGTTTGTATTGGCAGAAAATGATTTAGATTTGATCGAACAGCATATT
AATCAAGTAGACCCGGATGTGCTGATTATTGACTCGATCCAGACCGTGTTTCACCCGACGATTCAATCGGCTGCGGGAAG
CGTTGCACAAGTGCGGGAGGCAACAGCCCAATTGATGCGGATTGCAAAAGGAAAAGGGATTGGTACCTTCATCGTCGGTC
ACGTAACCAAGGAAGGCTCCATCGCAGGTCCGCGTATGCTTGAGCACATGGTGGATGCTGTTCTCTATTTTGAAGGGGAG
CGTCACAATACGTTTCGAATTTTGCGCGCCGTCAAAAACCGTTTTGGTTCGACAAACGAAATCGGTATTTTCGAGATGAA
GGATCGCGGTCTGGAGGAAGTGGCGAATCCATCTGAGATATTTTTGGCAGAGCGTCCATTTGGTGTTGCGGGTTCAACAG
TCGTAGCCAGTATGGAGGGCACACGTCCCGTTTTGGTTGAGCTGCAAGCTCTCGTTGCCCCGACCAGCTTTGTAACCCCA
CGGAGAACGGCAACAGGTGTCGATCATCAGCGTGTGGCAATGATCATGGCAGTGTTGGAAAAGCGCATGGGCATGATGCT
GCAAAATCAGGATGCTTATGTAAACGTAGCAGGTGGGGTCAGATTGGATGAGCCAGCAGTTGATTTGGCGATTGCCGTAA
GCATTGCAAGCAGTTTCCGTGACCACGCTACCAATCCGCATGATGTCGTTATCGGAGAAATTGGCTTGACTGGTGAGGTG
CGCGGTGTCTCCCGTATTGAGCAACGAGTACGAGAAGCCCATAAATTAGGCTTTAAGCGTGTCATCATACCGGAGAAAAA
CATCCGCGGGCTGGATGCGCCAGCAGATATTCAAGTAATTGGTGTGAGCAATATTGCCGATGCGTTGAACGAGGTGATAA
GGAGGTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(329-427)

AAA domain (AAA_25)

(71-219)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

65.929

99.341

0.655
  radA Streptococcus mitis NCTC 12261

58.057

99.56

0.578
  radA Streptococcus pneumoniae Rx1

58.057

99.56

0.578
  radA Streptococcus pneumoniae D39

58.057

99.56

0.578
  radA Streptococcus pneumoniae R6

58.057

99.56

0.578
  radA Streptococcus pneumoniae TIGR4

58.057

99.56

0.578
  radA Streptococcus mitis SK321

58.057

99.56

0.578