Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   QSV38_RS09890 Genome accession   NZ_CP128410
Coordinates   1898707..1900509 (+) Length   600 a.a.
NCBI ID   WP_289648674.1    Uniprot ID   -
Organism   Streptococcus parasuis strain 7500     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1893707..1905509
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSV38_RS09865 (QSV38_09865) - 1894054..1894341 (-) 288 WP_289648668.1 hypothetical protein -
  QSV38_RS09870 (QSV38_09870) - 1894563..1894826 (+) 264 WP_289648669.1 hypothetical protein -
  QSV38_RS09875 (QSV38_09875) - 1894870..1895463 (-) 594 WP_274504024.1 DUF1361 domain-containing protein -
  QSV38_RS09880 (QSV38_09880) metG 1895629..1897632 (+) 2004 WP_289648673.1 methionine--tRNA ligase -
  QSV38_RS09885 (QSV38_09885) coiA 1897696..1898634 (+) 939 WP_274504021.1 competence protein CoiA family protein Machinery gene
  QSV38_RS09890 (QSV38_09890) pepF 1898707..1900509 (+) 1803 WP_289648674.1 oligoendopeptidase F Regulator
  QSV38_RS09895 (QSV38_09895) - 1900511..1900957 (+) 447 WP_289648675.1 hypothetical protein -
  QSV38_RS09900 (QSV38_09900) - 1900970..1901518 (+) 549 WP_277837029.1 DUF6630 family protein -
  QSV38_RS09905 (QSV38_09905) - 1901593..1902312 (+) 720 WP_289648676.1 O-methyltransferase -
  QSV38_RS09910 (QSV38_09910) prsA 1902375..1903391 (+) 1017 WP_289648677.1 peptidylprolyl isomerase PrsA -
  QSV38_RS09915 (QSV38_09915) - 1903659..1904147 (+) 489 WP_130554263.1 LURP-one-related family protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69268.42 Da        Isoelectric Point: 4.5142

>NTDB_id=847345 QSV38_RS09890 WP_289648674.1 1898707..1900509(+) (pepF) [Streptococcus parasuis strain 7500]
MSKQRHEIEEKYQWDLTTIFPTDEAWEEELASLQAETETAKDFAGHLLDSAKSLLEISETQLGLMRRIEKLYVYASMKND
QDTREGKYQEFQAKAMGLYSAFSQAFAFYEPEFMAITEEQLKAFMDEEPTLVQYSHQFEKLLAAKDHVLSQEIEEVLAAT
SEIFESPAETFSVLDNASILFPEIADEEGHLVPLSHGNYIHFMESKNRDVRQEAYEAMYGTYEQFQHTYAKTLQSNVKVN
NLKARLRKYDSARHASLAANFIPESVYDTLVEAVNKHLPLLHRYINLRKKLLGIDDLKMYDMYTPLSDFSTKISYEDALK
KCQETLEIFGEDYSAIVKEAYENRWIDVHVNEGKRSGAYSGGAYDTNAFMLLNWQDNLDNMYTLIHETGHSLHSMLTRKT
QPYVYGHYSLFLAEIASTTNENLLTEKLLAEVEDDKERFAILNHYLDGFRGTVFRQTQFAEFEQAIYKADQEGQVLTADF
LNELYGQTNEKYYGLSAEENPEIQFEWARIPHFYYNFYVYQYATGFAAASALANKIVNGSPEDKENYLNYLKAGSSDYPL
NVIAKAGVDMTKEDYLNDAFKVFEARLTELEELVEKGVHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=847345 QSV38_RS09890 WP_289648674.1 1898707..1900509(+) (pepF) [Streptococcus parasuis strain 7500]
ATGTCTAAACAACGTCATGAAATTGAAGAAAAATACCAGTGGGATTTGACCACTATTTTTCCAACCGATGAAGCTTGGGA
AGAAGAATTAGCTTCATTACAAGCAGAAACTGAAACGGCAAAGGATTTTGCTGGCCACTTGCTTGATTCGGCTAAAAGTC
TCTTAGAAATTAGTGAAACACAACTCGGTCTCATGCGTCGCATTGAAAAACTCTATGTCTATGCGTCTATGAAGAACGAT
CAAGATACTCGTGAAGGTAAATACCAGGAATTTCAGGCTAAAGCCATGGGCTTGTATTCGGCCTTTTCACAGGCTTTTGC
ATTCTATGAACCTGAATTTATGGCTATTACTGAGGAACAGTTGAAAGCATTCATGGATGAAGAGCCAACTTTGGTGCAGT
ACAGCCATCAATTTGAAAAACTCTTAGCAGCTAAGGACCATGTTTTGTCACAAGAAATTGAAGAAGTATTGGCTGCTACG
AGTGAGATTTTCGAATCTCCAGCTGAAACTTTCTCTGTTTTGGATAATGCAAGTATCCTATTCCCTGAAATTGCGGATGA
AGAGGGACATTTGGTACCACTTTCTCACGGTAACTACATCCACTTTATGGAGTCTAAAAACCGCGACGTCCGTCAAGAAG
CATATGAGGCTATGTATGGAACCTATGAGCAGTTTCAGCATACCTACGCTAAGACTCTGCAGTCAAACGTTAAGGTCAAT
AACCTGAAAGCACGTTTGCGGAAGTACGACTCAGCCCGTCACGCATCTCTTGCAGCCAATTTTATTCCAGAATCTGTCTA
CGATACATTAGTTGAGGCAGTCAACAAGCACCTCCCGCTCTTGCACCGTTATATCAATTTGCGAAAGAAACTCTTGGGTA
TTGACGACTTGAAGATGTACGATATGTACACGCCATTGTCAGATTTTAGCACCAAGATTTCCTATGAAGATGCACTCAAA
AAATGCCAAGAAACCTTGGAAATCTTCGGTGAGGATTATTCGGCTATTGTAAAAGAAGCCTATGAGAATCGTTGGATTGA
CGTCCATGTCAATGAAGGAAAACGCTCAGGAGCATATTCAGGTGGTGCCTACGACACAAACGCCTTCATGCTTCTCAACT
GGCAAGATAACTTGGATAACATGTACACCCTTATCCATGAAACAGGACATTCTCTTCATTCCATGTTGACTCGTAAGACT
CAACCCTATGTCTATGGCCATTATTCACTTTTCTTAGCTGAAATTGCTTCAACTACCAACGAAAACCTTCTGACTGAAAA
ACTATTGGCAGAAGTAGAAGATGACAAGGAACGCTTTGCTATTCTTAACCATTACCTAGATGGTTTCCGTGGTACAGTCT
TCCGCCAGACACAATTTGCCGAGTTTGAACAGGCTATCTATAAGGCAGACCAAGAAGGTCAAGTCTTGACGGCTGATTTC
CTCAATGAATTATACGGTCAGACTAACGAAAAATACTACGGACTTTCTGCAGAAGAAAACCCAGAAATCCAGTTTGAGTG
GGCTCGCATTCCACACTTCTATTACAATTTCTATGTCTATCAATATGCGACAGGTTTTGCGGCAGCATCAGCTCTCGCAA
ACAAGATTGTCAATGGTAGTCCAGAAGACAAAGAAAACTATCTCAACTACTTGAAGGCTGGTAGCTCAGATTATCCCCTC
AACGTCATTGCAAAAGCTGGTGTAGATATGACCAAGGAAGACTATCTTAACGATGCTTTCAAAGTTTTTGAAGCACGCCT
AACTGAATTGGAAGAGCTTGTTGAAAAAGGGGTACATCTCTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

70.167

100

0.702