Detailed information NTG0847342

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: QSV38_RS08955
• Genome accession: NZ_CP128410
• Coordinates: 1720041..1720976 (+)
• Length: 311 a.a.
• NCBI ID: WP_274504176.1
• Uniprot ID: -
• Organism: Streptococcus parasuis strain 7500
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 1715041..1725976

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QSV38_RS08935 (QSV38_08935)	-	1715313..1716959 (+)	1647	WP_289648474.1	peptide ABC transporter substrate-binding protein	-
QSV38_RS08940 (QSV38_08940)	-	1717030..1717944 (+)	915	WP_274504179.1	ABC transporter permease	-
QSV38_RS08945 (QSV38_08945)	-	1717955..1718986 (+)	1032	WP_024396826.1	ABC transporter permease	-
QSV38_RS08950 (QSV38_08950)	oppD	1719001..1720044 (+)	1044	WP_289648478.1	ABC transporter ATP-binding protein	Regulator
QSV38_RS08955 (QSV38_08955)	amiF	1720041..1720976 (+)	936	WP_274504176.1	ATP-binding cassette domain-containing protein	Regulator
QSV38_RS08960 (QSV38_08960)	-	1721031..1721399 (-)	369	WP_289648481.1	DUF3397 domain-containing protein	-
QSV38_RS08965 (QSV38_08965)	rplK	1721554..1721979 (+)	426	WP_024382554.1	50S ribosomal protein L11	-
QSV38_RS08970 (QSV38_08970)	rplA	1722020..1722709 (+)	690	WP_217374084.1	50S ribosomal protein L1	-
QSV38_RS08975 (QSV38_08975)	-	1722815..1723105 (+)	291	WP_217374083.1	hypothetical protein	-
QSV38_RS08980 (QSV38_08980)	yghU	1723114..1723902 (+)	789	WP_130555256.1	glutathione-dependent disulfide-bond oxidoreductase	-
QSV38_RS08985 (QSV38_08985)	-	1723990..1725560 (+)	1571	WP_289648487.1	IS3 family transposase	-

Sequence

Protein

• Length: 311 a.a.
• Molecular weight: 34983.74 Da
• Isoelectric Point: 6.0122

>NTDB_id=847342 QSV38_RS08955 WP_274504176.1 1720041..1720976(+) (amiF) [Streptococcus parasuis strain 7500]
MSESRKKLVELKNVSLTFNAGKKNEVKAIDNVSFDIYEGEVFGLVGESGSGKTTVGRTILKLYDYNAGDILFDGQSISKL
SGKDLKEFRKDAQMIFQDPQASLNGRMKIRDIVAEGLDIHGLTPSKEERDERVQHLLDLVGLNKDHLTRYPHEFSGGQRQ
RIGIARALAVRPKFIIADEPISALDVSIQAQVVNLMQKLQREQGLTYLFVAHDLSMVKYISDRIGVMHWGKMLEIGTSDA
VYNDPIHPYTKSLLSAIPEPDPEFEKGRVHMEYDPSAELDGQERQMHEITPGHFVLATEEEAAAYRAERNK

Nucleotide

• Length: 936 bp

>NTDB_id=847342 QSV38_RS08955 WP_274504176.1 1720041..1720976(+) (amiF) [Streptococcus parasuis strain 7500]
ATGAGCGAAAGTAGAAAAAAACTCGTTGAACTAAAAAATGTTTCATTGACTTTTAATGCAGGTAAGAAAAACGAAGTTAA
AGCCATTGACAATGTTTCCTTTGACATTTATGAAGGAGAGGTCTTTGGTCTCGTTGGTGAATCTGGGTCAGGAAAGACAA
CAGTTGGCCGTACCATTCTAAAGTTGTATGACTATAATGCTGGTGATATTCTCTTTGATGGCCAGTCTATTTCAAAGCTT
TCTGGAAAAGATTTGAAAGAATTTCGAAAAGATGCACAAATGATTTTCCAAGATCCTCAAGCTAGTTTGAATGGTCGTAT
GAAAATCAGAGATATTGTTGCAGAAGGTTTGGACATTCACGGCTTGACTCCTTCAAAAGAAGAACGGGATGAGCGTGTTC
AACATTTATTGGATTTAGTCGGTTTAAATAAGGATCATTTAACGCGTTATCCGCATGAGTTTTCAGGTGGACAACGACAA
CGGATTGGTATTGCACGTGCCTTAGCAGTTCGTCCAAAATTCATTATCGCTGACGAACCAATCTCAGCTTTAGATGTTTC
CATTCAAGCACAAGTTGTTAATTTGATGCAAAAATTGCAGAGAGAACAAGGTCTAACCTACCTCTTTGTTGCACACGATT
TGTCAATGGTTAAGTACATCTCTGACCGTATTGGTGTTATGCACTGGGGTAAAATGTTGGAAATTGGAACGTCGGATGCT
GTTTACAATGATCCAATTCATCCGTACACGAAGAGTTTGCTTTCTGCTATCCCTGAACCGGATCCAGAATTTGAAAAAGG
TCGTGTCCATATGGAATACGATCCAAGTGCTGAATTAGATGGTCAAGAACGTCAGATGCATGAGATTACGCCTGGTCACT
TTGTATTGGCTACAGAAGAAGAGGCTGCGGCATACCGCGCTGAACGAAACAAATAA

Domains

Predicted by InterproScan.

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (233-265)

• ABC transporter (ABC_tran) (30-181)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMD-9	52.922	99.035	0.524
amiF	Streptococcus thermophilus LMG 18311	52.597	99.035	0.521
amiF	Streptococcus salivarius strain HSISS4	52.273	99.035	0.518