Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   QSV38_RS07875 Genome accession   NZ_CP128410
Coordinates   1504352..1505086 (+) Length   244 a.a.
NCBI ID   WP_277837469.1    Uniprot ID   -
Organism   Streptococcus parasuis strain 7500     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1499352..1510086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSV38_RS07845 (QSV38_07845) - 1499809..1501065 (-) 1257 WP_289647223.1 ISL3 family transposase -
  QSV38_RS07850 (QSV38_07850) tsaE 1501298..1501738 (+) 441 WP_217375192.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  QSV38_RS07855 (QSV38_07855) - 1501731..1502258 (+) 528 WP_217374250.1 GNAT family N-acetyltransferase -
  QSV38_RS07860 (QSV38_07860) - 1502255..1503430 (+) 1176 WP_289647224.1 LCP family protein -
  QSV38_RS07865 (QSV38_07865) - 1503572..1503874 (-) 303 WP_289647225.1 chemotaxis protein -
  QSV38_RS07870 (QSV38_07870) - 1503876..1504289 (-) 414 WP_217374247.1 HIT family protein -
  QSV38_RS07875 (QSV38_07875) pptA 1504352..1505086 (+) 735 WP_277837469.1 ABC transporter ATP-binding protein Regulator
  QSV38_RS07880 (QSV38_07880) - 1505083..1506123 (+) 1041 WP_217374245.1 ABC transporter permease -
  QSV38_RS07885 (QSV38_07885) ccrZ 1506173..1506967 (+) 795 WP_217374244.1 cell cycle regulator CcrZ -
  QSV38_RS07890 (QSV38_07890) trmB 1506964..1507602 (+) 639 WP_171989646.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  QSV38_RS07895 (QSV38_07895) rpmB 1507805..1507993 (+) 189 WP_001140948.1 50S ribosomal protein L28 -
  QSV38_RS07900 (QSV38_07900) - 1508297..1509151 (+) 855 WP_217374243.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 26993.34 Da        Isoelectric Point: 4.6747

>NTDB_id=847333 QSV38_RS07875 WP_277837469.1 1504352..1505086(+) (pptA) [Streptococcus parasuis strain 7500]
MLEVKNITGGYINIPVVKDVSFTVESGQLVGLIGLNGAGKSTTIKEIIGLLTPYQGEILIDGKSLVQDAENYRKKIGFIP
ETPSLYEELTLKEHLEVVALAYDLTWDQAWSRVQGLLTVFRLGEKLDWFPVHFSKGMKQKVMIICAFMVEPSLLIVDEPF
LGLDPVAISDLVNLLEEEKAKGTSILMSTHVLDSAEKMCDSFVILHQGQVRATGNLEELQHAFNMKGASLNEIYLALTQE
GVAR

Nucleotide


Download         Length: 735 bp        

>NTDB_id=847333 QSV38_RS07875 WP_277837469.1 1504352..1505086(+) (pptA) [Streptococcus parasuis strain 7500]
ATGTTAGAAGTAAAAAATATAACAGGAGGCTACATCAATATTCCCGTAGTGAAAGATGTATCTTTCACTGTTGAGAGCGG
TCAGTTAGTTGGCTTAATTGGATTGAATGGTGCAGGGAAATCAACGACGATAAAGGAAATTATTGGCCTTTTGACTCCTT
ATCAGGGAGAAATTTTAATTGATGGGAAAAGTCTTGTACAGGATGCAGAGAATTATCGGAAGAAAATTGGATTTATCCCT
GAAACACCTAGCTTGTATGAGGAATTGACGCTTAAGGAACATTTAGAGGTAGTAGCTTTAGCCTATGATTTGACTTGGGA
TCAAGCCTGGAGTCGAGTTCAGGGGTTGTTAACGGTTTTTCGGTTGGGTGAAAAATTGGACTGGTTCCCTGTTCATTTTT
CTAAGGGAATGAAACAGAAAGTTATGATTATCTGTGCTTTCATGGTGGAACCGAGTTTGTTGATTGTTGACGAGCCGTTT
TTAGGGCTGGATCCTGTAGCGATTTCGGACTTAGTAAACCTATTAGAAGAGGAGAAAGCTAAAGGAACTTCAATTCTGAT
GTCTACTCATGTTCTTGACTCGGCCGAGAAAATGTGTGATTCTTTTGTTATCTTACATCAAGGTCAGGTTCGTGCAACAG
GGAATTTAGAGGAATTGCAACATGCCTTTAACATGAAAGGTGCAAGTCTCAACGAAATTTATCTGGCGTTGACACAAGAA
GGAGTGGCCAGATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

70.293

97.951

0.689
  pptA Streptococcus thermophilus LMD-9

69.038

97.951

0.676