Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   QSV38_RS07545 Genome accession   NZ_CP128410
Coordinates   1438603..1439316 (+) Length   237 a.a.
NCBI ID   WP_289647174.1    Uniprot ID   -
Organism   Streptococcus parasuis strain 7500     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1433603..1444316
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSV38_RS07530 (QSV38_07530) - 1434327..1434620 (-) 294 WP_274504296.1 iron chaperone -
  QSV38_RS07535 (QSV38_07535) treC 1434671..1436293 (-) 1623 WP_289647172.1 alpha,alpha-phosphotrehalase -
  QSV38_RS07540 (QSV38_07540) treP 1436372..1438372 (-) 2001 WP_289647173.1 PTS system trehalose-specific EIIBC component -
  QSV38_RS07545 (QSV38_07545) treR 1438603..1439316 (+) 714 WP_289647174.1 trehalose operon repressor Regulator
  QSV38_RS07550 (QSV38_07550) - 1439374..1439691 (+) 318 WP_130554395.1 hypothetical protein -
  QSV38_RS07555 (QSV38_07555) - 1439688..1440236 (+) 549 WP_130554394.1 CvpA family protein -
  QSV38_RS07560 (QSV38_07560) - 1440676..1443009 (+) 2334 WP_289647175.1 endonuclease MutS2 -
  QSV38_RS07565 (QSV38_07565) trxA 1443270..1443584 (+) 315 WP_130554392.1 thioredoxin -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27611.58 Da        Isoelectric Point: 6.5135

>NTDB_id=847332 QSV38_RS07545 WP_289647174.1 1438603..1439316(+) (treR) [Streptococcus parasuis strain 7500]
MKKYQEIYNDLKEKIRTNFYPAETSLPTEQQLQEMYQVSRDTVRKALAILTERGMIQKVQGRGSLVLKQELLNFPISGLT
SYQELTDALQLQSDTAVVDLELITVNSNLSQLTGFEPFSKVWKIVRTRSIDGKVSVVDTDYLSSDIVPKMDKEIAKGSIY
QYLEKELKLDISYAQKEITVEPTSWEERELMKTQDDYLVLIKSRVFLGDTQQFQYTESKHKIDKFRFVDFARRKHSL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=847332 QSV38_RS07545 WP_289647174.1 1438603..1439316(+) (treR) [Streptococcus parasuis strain 7500]
ATGAAAAAATATCAAGAAATATATAATGATTTAAAAGAGAAAATACGAACAAATTTCTATCCTGCTGAGACTTCTTTACC
AACTGAACAACAATTGCAAGAAATGTATCAAGTTAGCCGAGATACTGTTCGAAAAGCACTGGCTATTCTGACAGAACGCG
GAATGATTCAAAAAGTTCAAGGAAGAGGTTCTCTAGTTTTAAAACAGGAACTATTGAATTTTCCTATTTCTGGCTTAACT
TCGTATCAAGAATTGACGGATGCTTTGCAGTTGCAGTCAGATACAGCGGTTGTTGATTTAGAGCTCATTACAGTAAATAG
TAATTTATCTCAATTAACAGGATTTGAACCATTTAGTAAAGTATGGAAAATTGTACGTACAAGGTCCATAGATGGAAAGG
TTTCAGTAGTTGATACGGATTATCTCTCTTCAGATATTGTTCCGAAGATGGATAAAGAAATTGCAAAAGGTTCAATCTAT
CAATATTTAGAAAAAGAACTAAAATTGGATATATCCTATGCTCAAAAAGAAATTACGGTTGAACCAACCAGTTGGGAAGA
ACGTGAATTGATGAAGACTCAAGATGATTACTTGGTATTGATAAAATCAAGAGTTTTTCTAGGCGATACACAACAATTTC
AATATACTGAAAGCAAGCATAAAATTGATAAATTCCGCTTTGTGGATTTTGCTCGTAGAAAGCATTCACTATAG

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(91-226)

Bacterial regulatory proteins, gntR family (GntR)

(3-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

50.855

98.734

0.502