Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   QSV38_RS05360 Genome accession   NZ_CP128410
Coordinates   1022743..1024110 (-) Length   455 a.a.
NCBI ID   WP_289649337.1    Uniprot ID   -
Organism   Streptococcus parasuis strain 7500     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1017743..1029110
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSV38_RS05335 (QSV38_05335) gltX 1018666..1020120 (-) 1455 WP_289646130.1 glutamate--tRNA ligase -
  QSV38_RS05340 (QSV38_05340) - 1020513..1020884 (-) 372 WP_289646133.1 hypothetical protein -
  QSV38_RS05345 (QSV38_05345) - 1020871..1020996 (-) 126 WP_277837277.1 hypothetical protein -
  QSV38_RS05350 (QSV38_05350) - 1021167..1021925 (-) 759 WP_277844254.1 TIGR00266 family protein -
  QSV38_RS05355 (QSV38_05355) - 1022125..1022619 (-) 495 WP_171988974.1 carbonic anhydrase -
  QSV38_RS05360 (QSV38_05360) radA 1022743..1024110 (-) 1368 WP_289649337.1 DNA repair protein RadA Machinery gene
  QSV38_RS05365 (QSV38_05365) - 1024117..1024580 (-) 464 Protein_1041 histidine phosphatase family protein -
  QSV38_RS05370 (QSV38_05370) - 1024656..1025099 (-) 444 WP_024388517.1 dUTP diphosphatase -
  QSV38_RS05375 (QSV38_05375) - 1025330..1025689 (-) 360 WP_130554221.1 YbaN family protein -
  QSV38_RS05380 (QSV38_05380) - 1025818..1026420 (+) 603 WP_002939942.1 NADPH-dependent FMN reductase -
  QSV38_RS05385 (QSV38_05385) - 1026435..1027670 (+) 1236 WP_289646139.1 NAD(P)H-dependent oxidoreductase -
  QSV38_RS05390 (QSV38_05390) - 1027751..1028545 (+) 795 WP_130554224.1 formate/nitrite transporter family protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49857.35 Da        Isoelectric Point: 6.1911

>NTDB_id=847311 QSV38_RS05360 WP_289649337.1 1022743..1024110(-) (radA) [Streptococcus parasuis strain 7500]
MIIAKKKTTFVCQNCEYHSPKYLGRCPNCGSWSSFVEEVEVAEVKNERVSLTGEKTRPMKLNEVSSIQVARTKTSMEEFN
RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSTIGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSIRTE
IEKIKPDFLIIDSIQTIMSPDISSVQGSVSQVREVTNELMQIAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEG
ERQHTFRILRAVKNRFGSTNEIGIFEMQSQGLVEVLNPSEVFLEERLDGATGSAIVVTMEGTRPILAEVQALVTPSMFGN
AKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVALASSYKDKPTNPQECFIGEIGLTGE
IRRVNRIEQRINEAAKLGFTKVYAPKNSLTGIKVPKEITVIGVTTIGEVLQKVFN

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=847311 QSV38_RS05360 WP_289649337.1 1022743..1024110(-) (radA) [Streptococcus parasuis strain 7500]
ATCATCATCGCTAAGAAAAAAACAACCTTTGTCTGCCAAAATTGTGAATACCATTCGCCCAAGTATCTGGGCCGTTGCCC
CAACTGTGGCTCCTGGTCTAGCTTTGTCGAGGAAGTTGAAGTCGCTGAAGTCAAGAACGAGCGGGTTAGCCTGACAGGTG
AGAAGACCCGTCCCATGAAACTCAATGAAGTTTCCTCCATTCAAGTGGCTCGCACCAAGACCAGCATGGAGGAATTCAAC
CGTGTCCTCGGTGGCGGTGTGGTGCCAGGGAGTCTGGTCCTGATCGGAGGCGATCCAGGGATTGGCAAATCCACCCTACT
CTTGCAGGTTTCGACCCAGCTTTCGACCATTGGTACCGTCCTCTATGTGTCCGGGGAAGAGTCTGCCCAGCAGATTAAGT
TGCGGGCGGAACGTTTGGGCGACATCGACAGCGAGTTCTATCTCTATGCGGAGACCAATATGCAGAGCATTCGGACCGAG
ATTGAAAAGATTAAGCCAGATTTCCTGATTATCGACTCTATCCAAACCATTATGAGTCCTGACATTTCTAGCGTACAAGG
TTCTGTCAGTCAGGTCCGTGAAGTGACCAATGAACTCATGCAAATTGCCAAGACCAACAACATCGCAACCTTTATCGTCG
GTCACATGACCAAGGAAGGAACCCTGGCTGGACCTCGGACCTTGGAGCATATGGTAGACACCGTTCTTTATTTTGAAGGC
GAGCGGCAGCATACCTTTCGTATCTTGCGGGCGGTCAAAAACCGCTTTGGCTCCACCAACGAAATCGGCATTTTTGAAAT
GCAGTCACAGGGTTTGGTCGAAGTCCTCAATCCTAGTGAGGTCTTTCTGGAAGAGCGTTTGGACGGGGCGACAGGCTCTG
CTATTGTCGTGACCATGGAGGGCACCCGCCCTATCCTTGCCGAAGTGCAGGCTCTGGTGACCCCGAGCATGTTTGGCAAT
GCCAAGCGGACCACGACAGGCTTGGACTTCAACCGTGCCAGCTTGATTATGGCGGTTTTGGAAAAACGGGCAGGCCTGCT
CCTCCAAAACCAAGATGCCTACCTTAAGTCAGCTGGCGGTGTCAAACTGGATGAGCCAGCTATTGACCTGGCGGTCGCAG
TTGCCCTTGCCTCCAGTTACAAAGATAAGCCAACCAACCCACAAGAGTGCTTTATAGGGGAGATTGGCCTGACAGGTGAA
ATCCGCCGTGTCAATCGGATTGAGCAACGGATTAACGAAGCCGCTAAATTGGGCTTTACCAAGGTCTATGCTCCTAAAAA
TTCCCTGACCGGTATCAAGGTGCCCAAGGAAATAACGGTTATCGGCGTGACAACAATTGGCGAAGTTCTGCAAAAAGTGT
TTAACTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(64-220)

Subunit ChlI of Mg-chelatase (ChlI)

(363-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

91.372

99.341

0.908
  radA Streptococcus pneumoniae Rx1

91.15

99.341

0.905
  radA Streptococcus pneumoniae D39

91.15

99.341

0.905
  radA Streptococcus pneumoniae R6

91.15

99.341

0.905
  radA Streptococcus pneumoniae TIGR4

91.15

99.341

0.905
  radA Streptococcus mitis SK321

90.929

99.341

0.903
  radA Bacillus subtilis subsp. subtilis str. 168

62.252

99.56

0.62