Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   V4Q78_RS11480 Genome accession   NZ_CP144563
Coordinates   2294442..2295077 (-) Length   211 a.a.
NCBI ID   WP_000264044.1    Uniprot ID   A0A0D5YJ84
Organism   Acinetobacter baumannii strain AB5075 isolate grey variant     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2289442..2300077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V4Q78_RS11455 (V4Q78_11455) - 2289498..2290478 (-) 981 WP_001075416.1 DNA polymerase III subunit delta' -
  V4Q78_RS11460 (V4Q78_11460) kdsB 2290490..2291251 (-) 762 WP_000680692.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  V4Q78_RS11465 (V4Q78_11465) lpxK 2291261..2292271 (-) 1011 WP_000050479.1 tetraacyldisaccharide 4'-kinase -
  V4Q78_RS11470 (V4Q78_11470) msbA 2292274..2294001 (-) 1728 WP_001070729.1 lipid A export permease/ATP-binding protein MsbA -
  V4Q78_RS11475 (V4Q78_11475) - 2293998..2294426 (-) 429 WP_000669684.1 biopolymer transporter ExbD -
  V4Q78_RS11480 (V4Q78_11480) exbB 2294442..2295077 (-) 636 WP_000264044.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  V4Q78_RS11485 (V4Q78_11485) - 2295127..2296014 (-) 888 WP_000023429.1 ParB/RepB/Spo0J family partition protein -
  V4Q78_RS11490 (V4Q78_11490) - 2296011..2296793 (-) 783 WP_000057212.1 ParA family protein -
  V4Q78_RS11495 (V4Q78_11495) rsmG 2296815..2297447 (-) 633 WP_000553193.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  V4Q78_RS11500 (V4Q78_11500) murU 2297535..2298224 (-) 690 WP_000646460.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  V4Q78_RS11505 (V4Q78_11505) - 2298224..2299237 (-) 1014 WP_001096103.1 phosphotransferase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23254.21 Da        Isoelectric Point: 6.4861

>NTDB_id=847276 V4Q78_RS11480 WP_000264044.1 2294442..2295077(-) (exbB) [Acinetobacter baumannii strain AB5075 isolate grey variant]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDVSADISVVITNLEQDTNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSIMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=847276 V4Q78_RS11480 WP_000264044.1 2294442..2295077(-) (exbB) [Acinetobacter baumannii strain AB5075 isolate grey variant]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGTCAGTGCAGATATTTCTGTTG
TCATAACAAATTTGGAACAGGATACTAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCTCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATCTCTTATTTAGAAAAAAATATTAA
CTTCTTAGGGACCTTAAGTGCTATAGCGCCTCTACTAGGGCTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTAATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCGACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAATCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D5YJ84

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.979

90.521

0.398