Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   QTN91_RS13265 Genome accession   NZ_CP128389
Coordinates   2721021..2721995 (+) Length   324 a.a.
NCBI ID   WP_000697220.1    Uniprot ID   W8U5L8
Organism   Staphylococcus aureus strain 21-024     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2716021..2726995
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QTN91_RS13230 (QTN91_13230) rpmG 2716481..2716630 (+) 150 WP_001265709.1 50S ribosomal protein L33 -
  QTN91_RS13235 (QTN91_13235) - 2716839..2717378 (+) 540 WP_000164554.1 5-formyltetrahydrofolate cyclo-ligase -
  QTN91_RS13240 (QTN91_13240) - 2717390..2718853 (+) 1464 WP_001017856.1 rhomboid family intramembrane serine protease -
  QTN91_RS13245 (QTN91_13245) - 2718834..2719037 (+) 204 WP_000087559.1 YqgQ family protein -
  QTN91_RS13250 (QTN91_13250) - 2719034..2720020 (+) 987 WP_000161315.1 ROK family glucokinase -
  QTN91_RS13255 (QTN91_13255) - 2720020..2720349 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  QTN91_RS13260 (QTN91_13260) - 2720346..2720969 (+) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  QTN91_RS13265 (QTN91_13265) comGA 2721021..2721995 (+) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  QTN91_RS13270 (QTN91_13270) comGB 2721967..2723037 (+) 1071 WP_000776425.1 competence type IV pilus assembly protein ComGB Machinery gene
  QTN91_RS13275 (QTN91_13275) comGC 2723051..2723362 (+) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  QTN91_RS13280 (QTN91_13280) comGD 2723340..2723786 (+) 447 WP_001796473.1 competence type IV pilus minor pilin ComGD Machinery gene
  QTN91_RS13285 (QTN91_13285) comGE 2723773..2724072 (+) 300 WP_000844413.1 hypothetical protein Machinery gene
  QTN91_RS13290 (QTN91_13290) comGF 2723990..2724487 (+) 498 WP_001825340.1 competence type IV pilus minor pilin ComGF Machinery gene
  QTN91_RS13295 (QTN91_13295) - 2724584..2724730 (+) 147 WP_001789879.1 hypothetical protein -
  QTN91_RS13300 (QTN91_13300) - 2724720..2725244 (+) 525 WP_001015120.1 shikimate kinase -
  QTN91_RS13305 (QTN91_13305) gcvT 2725403..2726494 (+) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 36897.96 Da        Isoelectric Point: 8.8516

>NTDB_id=847228 QTN91_RS13265 WP_000697220.1 2721021..2721995(+) (comGA) [Staphylococcus aureus strain 21-024]
MKILFQEIINKAIEMKASDVHFIPVKNEVSIKFRINDNLEQYEQIGNSIYQKLLVYMKFQAGLDVSTQQVAQSGRYSYHF
NKIYFLRISTLPLSLGQESCVIRIVPQFFQQQKSTYKFNDFKHLMNKKQGLLLFSGPTGSGKSTLMYQMVSYANKALNLN
VISIEDPVEMQIPGIVQINVNDKAGINYVNSFKAILRCDPDVILIGEIRDKDVAKCVIQASLSGHLVLTTLHATDCKGAI
LRLLEMGISVQELIQATNLIINQRLVTTIKQQRQLVCEILSQQQLRYFFSHNHSLPSSFKNLEDKLDDMTKAGVICETTM
DKYI

Nucleotide


Download         Length: 975 bp        

>NTDB_id=847228 QTN91_RS13265 WP_000697220.1 2721021..2721995(+) (comGA) [Staphylococcus aureus strain 21-024]
TTGAAGATTCTATTTCAAGAAATAATTAATAAAGCGATAGAAATGAAAGCGAGTGATGTACATTTTATTCCAGTTAAAAA
TGAAGTAAGTATTAAATTTAGAATTAATGATAACTTGGAGCAGTACGAACAAATTGGGAATAGCATTTATCAAAAGTTAT
TAGTTTATATGAAGTTTCAAGCTGGGCTTGATGTTTCTACACAGCAAGTCGCACAGAGCGGTCGATATAGTTACCATTTC
AATAAAATATATTTTTTGAGAATATCAACTTTACCATTGTCACTTGGCCAAGAAAGTTGTGTTATCAGAATTGTACCTCA
ATTTTTTCAACAACAGAAATCAACTTATAAATTCAATGATTTTAAACACCTCATGAATAAGAAACAAGGATTACTATTGT
TTAGTGGGCCAACTGGTTCAGGAAAGAGTACATTAATGTATCAAATGGTCTCATACGCGAATAAAGCCTTGAATTTAAAT
GTAATTTCTATAGAGGATCCTGTAGAGATGCAAATTCCTGGTATTGTCCAAATTAATGTGAATGATAAAGCTGGCATTAA
CTATGTAAATTCGTTTAAAGCTATTTTAAGATGTGATCCTGATGTTATTTTAATAGGTGAAATCAGAGATAAAGATGTTG
CCAAGTGTGTTATACAGGCTAGTTTAAGTGGTCACCTTGTTCTGACTACATTGCATGCAACTGATTGTAAAGGTGCTATT
TTAAGGCTATTAGAAATGGGCATTTCTGTACAAGAATTGATACAGGCAACTAACTTAATTATAAACCAACGACTTGTAAC
TACTATTAAGCAACAGCGACAATTAGTATGTGAAATTCTATCTCAGCAACAACTCCGATATTTCTTTTCCCATAATCATT
CATTACCATCATCATTTAAGAACTTAGAAGATAAACTTGATGATATGACAAAAGCAGGTGTCATTTGTGAAACTACAATG
GATAAATACATTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB W8U5L8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Staphylococcus aureus MW2

100

100

1
  comGA Staphylococcus aureus N315

100

100

1