Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   VM636_RS27600 Genome accession   NZ_CP144555
Coordinates   6225888..6226553 (+) Length   221 a.a.
NCBI ID   WP_030417574.1    Uniprot ID   -
Organism   Streptomyces sp. SCSIO 75703     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6220888..6231553
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VM636_RS27580 (VM636_27580) - 6221993..6223237 (+) 1245 WP_030417578.1 geranylgeranyl reductase family protein -
  VM636_RS27585 (VM636_27585) - 6223224..6223679 (-) 456 WP_053913145.1 nitroreductase/quinone reductase family protein -
  VM636_RS27590 (VM636_27590) - 6223868..6224560 (+) 693 WP_053913144.1 TetR/AcrR family transcriptional regulator -
  VM636_RS27595 (VM636_27595) - 6224665..6225891 (+) 1227 WP_078855619.1 sensor histidine kinase -
  VM636_RS27600 (VM636_27600) vraR 6225888..6226553 (+) 666 WP_030417574.1 response regulator transcription factor Regulator
  VM636_RS27605 (VM636_27605) - 6226480..6227022 (+) 543 WP_051821109.1 hypothetical protein -
  VM636_RS27610 (VM636_27610) - 6227036..6228415 (-) 1380 WP_053913143.1 GH1 family beta-glucosidase -
  VM636_RS27615 (VM636_27615) - 6228989..6230200 (-) 1212 WP_053913142.1 cysteine desulfurase-like protein -
  VM636_RS27620 (VM636_27620) - 6230284..6231348 (-) 1065 WP_030417570.1 membrane protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 23821.56 Da        Isoelectric Point: 4.7928

>NTDB_id=847151 VM636_RS27600 WP_030417574.1 6225888..6226553(+) (vraR) [Streptomyces sp. SCSIO 75703]
MIRVLLADDQSLVRAGFRALLDAQPDIEVAGEAADGEEALRALRETPADVVLMDIRMPRLDGLAATREITGDPALGAVRV
VMLTTFELDEYVFEAIRSGASGFLVKDTEPEELLRAVRAVVAGDALLSPGVTRRLIAEFAARSKEPAAADALARLTERER
EVMALVGIGLSNEEIARRLVVSPLTAKTHVSRAMVKLGVRDRAQLVVLAYESGLVRPGWLG

Nucleotide


Download         Length: 666 bp        

>NTDB_id=847151 VM636_RS27600 WP_030417574.1 6225888..6226553(+) (vraR) [Streptomyces sp. SCSIO 75703]
GTGATCCGCGTCCTGCTCGCCGACGACCAGTCGCTGGTCAGGGCCGGGTTCCGCGCCCTGCTCGACGCCCAGCCGGACAT
CGAGGTCGCGGGCGAGGCCGCGGACGGCGAGGAGGCACTGCGCGCGCTCCGCGAGACGCCCGCGGACGTCGTCCTCATGG
ACATCCGCATGCCCCGCCTGGACGGCCTCGCCGCCACCCGCGAGATCACCGGGGACCCGGCGCTCGGCGCGGTGCGGGTG
GTCATGCTCACCACCTTCGAACTCGACGAGTACGTCTTCGAGGCCATCCGCTCCGGCGCCTCCGGCTTCCTGGTCAAGGA
CACCGAGCCGGAGGAACTGCTGCGCGCCGTCCGGGCGGTGGTCGCCGGCGACGCGCTGCTCTCGCCCGGGGTGACCCGCC
GCCTGATCGCCGAGTTCGCGGCCCGGTCCAAGGAGCCCGCCGCGGCCGACGCCCTGGCCCGGCTCACCGAACGCGAGCGC
GAGGTGATGGCCCTCGTCGGCATCGGCCTGTCCAACGAGGAGATCGCCCGCCGCCTGGTCGTCAGCCCGCTCACCGCGAA
GACCCATGTCAGCCGCGCCATGGTGAAGCTCGGTGTCCGCGACCGCGCCCAGCTCGTCGTCCTGGCCTACGAATCCGGCC
TGGTGCGGCCCGGCTGGCTCGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.209

97.285

0.362