Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   VM636_RS23105 Genome accession   NZ_CP144555
Coordinates   5261513..5264533 (+) Length   1006 a.a.
NCBI ID   WP_338485549.1    Uniprot ID   -
Organism   Streptomyces sp. SCSIO 75703     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5256513..5269533
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VM636_RS23080 (VM636_23080) - 5256844..5257845 (+) 1002 WP_338485545.1 TerC family protein -
  VM636_RS23085 (VM636_23085) - 5257978..5259078 (+) 1101 WP_030423146.1 ionic transporter y4hA -
  VM636_RS23090 (VM636_23090) aroQ 5259179..5259652 (+) 474 WP_030423147.1 type II 3-dehydroquinate dehydratase -
  VM636_RS23095 (VM636_23095) - 5259929..5260585 (-) 657 WP_030423148.1 MBL fold metallo-hydrolase -
  VM636_RS23100 (VM636_23100) - 5260603..5261289 (-) 687 WP_053912636.1 maleylpyruvate isomerase family mycothiol-dependent enzyme -
  VM636_RS23105 (VM636_23105) uvrA 5261513..5264533 (+) 3021 WP_338485549.1 excinuclease ABC subunit UvrA Machinery gene
  VM636_RS23110 (VM636_23110) - 5264659..5265567 (-) 909 WP_338485551.1 carbohydrate kinase -
  VM636_RS23115 (VM636_23115) - 5265650..5266726 (-) 1077 WP_338485553.1 LacI family DNA-binding transcriptional regulator -
  VM636_RS23120 (VM636_23120) - 5267331..5267759 (+) 429 WP_053912639.1 Rieske (2Fe-2S) protein -
  VM636_RS23125 (VM636_23125) - 5267793..5268743 (-) 951 WP_338485554.1 hypothetical protein -

Sequence

Protein


Download         Length: 1006 a.a.        Molecular weight: 110314.56 Da        Isoelectric Point: 7.8494

>NTDB_id=847145 VM636_RS23105 WP_338485549.1 5261513..5264533(+) (uvrA) [Streptomyces sp. SCSIO 75703]
MADRLIVRGAREHNLKNVSLDLPRDALIVFTGLSGSGKSSLAFDTIFAEGQRRYVESLSSYARQFLGQMDKPDVDFIEGL
SPAVSIDQKSTSRNPRSTVGTITEVYDYLRLLFARIGKPHCPQCGRPISRQSPQAIVDRVLELPEGSRFQVLSPLVRERK
GEFVDLFADLQTKGYSRARVDGETIQLSQPPTLKKQEKHTIEVVVDRLTVKDSAKRRLTDSVETALGLSGGMVVLDFVDL
AEDDPERERMYSEHLYCAYDDLSFEELEPRSFSFNSPFGACPDCTGIGTRMEVDPELIVPDEEKSLDDGAIHPWSHGHTK
DYFGRLIGALADALGFRTDIPFAGLPQRARKALLYGHKTQVEVRYRNRYGRERRYTTAFEGAVPFVKRRHSEAESDASRE
RFEGYMREVPCPSCQGTRLKPVVLAVTVMGKSIAEVSAMSISDCADFLGELKLTDRDKKIAERVLKEVNERLRFLVDVGL
DYLSLNRAAGTLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNHRLIETLVRLRDMGNTLIVVEHDEDTIKVAD
WIVDIGPGAGEHGGKVVHSGGLKELLANAESQTGLYLAGKKAIPLPEIRRPLDPARQLTVHGARENNLKDIDVSFPLGVF
TAVTGVSGSGKSTLVNDILYTHLARELNGARTVPGRHTRVEGDDLVDKVVHVDQSPIGRTPRSNPATYTGVFDHIRKLFA
ETTEAKVRGYMPGRFSFNVKGGRCENCAGDGTIKIEMNFLPDVYVPCEVCHGARYNRETLEVHYKGKSIADVLNMPIEEA
TDFFEAVPSIARHMKTLKDVGLGYVRLGQSATTLSGGEAQRVKLASELQKRSTGRTVYVLDEPTTGLHFEDISKLLTVLS
GLVDKGNTVIVIEHNLDVIKTADWVVDMGPEGGAGGGLVVAEGTPEQVAGVPASHTGKFLRDILGADRISDAEPIPAPRR
AAKTAAKTAAKKTAARKTPAQKTEPKTARTTKKAAKPAKSAKPAAK

Nucleotide


Download         Length: 3021 bp        

>NTDB_id=847145 VM636_RS23105 WP_338485549.1 5261513..5264533(+) (uvrA) [Streptomyces sp. SCSIO 75703]
GTGGCCGACCGTCTCATCGTCCGTGGCGCGCGCGAGCACAACCTGAAGAACGTCTCGCTCGACCTGCCTCGCGACGCGCT
CATCGTCTTCACGGGCCTGTCCGGGTCGGGCAAGTCCTCCCTGGCCTTCGACACCATCTTCGCCGAGGGCCAGCGGCGCT
ACGTGGAGTCGCTCTCCAGCTACGCCCGGCAGTTCCTCGGCCAGATGGACAAGCCGGACGTCGACTTCATCGAGGGACTC
TCCCCGGCGGTCTCCATCGACCAGAAGTCGACCTCCCGCAACCCGCGCTCCACGGTCGGCACCATCACCGAGGTCTACGA
CTACCTGCGCCTGCTCTTCGCCCGCATCGGCAAGCCCCACTGCCCCCAGTGCGGCCGGCCGATCTCGCGCCAGTCACCGC
AGGCCATCGTGGACCGGGTCCTGGAACTGCCCGAGGGCAGCCGCTTCCAGGTGCTCTCGCCGCTGGTGCGCGAGCGCAAG
GGCGAGTTCGTCGACCTCTTCGCCGACCTCCAGACCAAGGGGTACTCCCGCGCGCGTGTGGACGGCGAGACGATCCAGCT
CTCCCAGCCGCCCACACTCAAGAAGCAGGAGAAGCACACCATCGAGGTGGTCGTCGACCGCCTCACGGTGAAGGACTCCG
CCAAGCGCCGCCTCACCGACTCCGTCGAGACCGCGCTCGGCCTCTCGGGCGGCATGGTCGTGCTCGACTTCGTCGACCTC
GCCGAGGACGACCCCGAGCGCGAGCGCATGTACTCGGAGCACCTGTACTGCGCCTACGACGACCTGTCCTTCGAGGAGCT
GGAGCCCCGCTCGTTCTCCTTCAACTCGCCCTTCGGCGCCTGCCCCGACTGCACCGGCATCGGCACGCGCATGGAGGTCG
ACCCCGAGCTGATCGTCCCGGACGAGGAGAAGTCCCTCGACGACGGCGCCATCCACCCCTGGTCGCACGGCCACACCAAG
GACTACTTCGGCCGCCTCATCGGCGCCCTCGCGGACGCGCTCGGCTTCCGTACCGACATCCCCTTCGCCGGGCTGCCGCA
GCGCGCCCGCAAAGCGCTGCTGTACGGACACAAGACCCAGGTCGAGGTCCGCTACCGCAACCGGTACGGGCGCGAGCGCC
GGTACACCACGGCGTTCGAGGGGGCCGTCCCCTTCGTCAAGCGCCGGCACAGCGAGGCCGAGAGCGACGCCAGCCGCGAG
CGCTTCGAGGGCTACATGCGCGAGGTGCCCTGCCCGAGCTGCCAGGGCACCCGCCTCAAGCCGGTCGTCCTCGCGGTCAC
CGTCATGGGCAAGTCGATCGCCGAGGTCTCCGCGATGTCGATCAGCGACTGCGCGGACTTCCTGGGCGAGCTGAAGCTCA
CCGACCGCGACAAGAAGATCGCCGAACGCGTGCTCAAGGAGGTCAACGAGCGGCTCCGCTTCCTCGTCGACGTCGGCCTC
GACTACCTCTCGCTGAACCGCGCGGCCGGCACCCTCTCCGGCGGCGAGGCCCAGCGGATCCGCCTGGCCACCCAGATCGG
CTCCGGACTCGTCGGCGTGCTCTACGTCCTCGACGAACCCTCCATCGGCCTGCACCAGCGCGACAACCACCGGCTGATCG
AGACCCTCGTCCGGCTCCGTGACATGGGCAACACCCTGATCGTCGTCGAGCACGACGAGGACACCATCAAGGTCGCCGAC
TGGATCGTCGACATCGGCCCCGGCGCGGGCGAGCACGGCGGCAAGGTGGTGCACAGCGGCGGGCTCAAGGAACTGCTGGC
CAACGCCGAATCGCAGACCGGTCTCTACCTGGCCGGCAAGAAGGCCATCCCGCTGCCCGAGATCCGGCGCCCGCTGGACC
CCGCCCGGCAGCTCACCGTGCACGGCGCCCGGGAGAACAACCTGAAGGACATCGACGTGTCCTTCCCGCTCGGCGTGTTC
ACGGCCGTCACCGGCGTCTCCGGCTCCGGCAAGTCGACCCTGGTCAACGACATCCTGTACACCCACCTCGCCCGCGAGCT
GAACGGCGCGCGGACCGTGCCCGGACGGCACACGCGCGTGGAGGGCGACGACCTGGTCGACAAGGTCGTCCACGTCGACC
AGTCGCCCATCGGCCGCACCCCGCGGTCGAACCCGGCGACGTACACCGGTGTCTTCGACCACATCCGCAAGCTGTTCGCC
GAGACCACCGAGGCGAAGGTCCGCGGGTACATGCCCGGCCGCTTCTCCTTCAACGTCAAGGGCGGCCGCTGCGAGAACTG
CGCGGGCGACGGCACCATCAAGATCGAGATGAACTTCCTCCCGGACGTCTACGTCCCGTGCGAGGTCTGCCACGGCGCCC
GGTACAACCGGGAGACCCTGGAGGTCCACTACAAGGGCAAGTCCATCGCCGACGTGCTGAACATGCCGATCGAGGAGGCC
ACGGACTTCTTCGAGGCGGTCCCCTCGATCGCCCGGCACATGAAGACCCTCAAGGACGTCGGCCTCGGCTACGTCCGGCT
CGGCCAGTCCGCGACGACCCTGTCCGGCGGCGAGGCGCAGCGGGTGAAGCTCGCCAGCGAACTCCAGAAGCGCTCCACCG
GCCGCACGGTCTACGTCCTGGACGAGCCGACCACCGGCCTGCACTTCGAGGACATCAGCAAGCTGCTGACGGTCCTGTCC
GGCCTGGTCGACAAGGGCAACACGGTCATCGTCATCGAGCACAACCTCGACGTGATCAAGACGGCCGACTGGGTCGTCGA
CATGGGCCCCGAAGGCGGCGCCGGCGGTGGCCTCGTGGTCGCCGAGGGCACGCCGGAGCAGGTCGCGGGCGTCCCCGCGA
GCCACACCGGCAAGTTCCTGCGGGACATCCTCGGCGCCGACCGGATCAGCGACGCCGAGCCGATCCCGGCACCGCGCAGG
GCGGCGAAGACGGCGGCCAAGACCGCCGCCAAGAAGACCGCCGCCCGGAAGACCCCGGCGCAGAAGACCGAGCCCAAGAC
CGCCAGGACCACCAAGAAGGCCGCCAAGCCGGCGAAGTCCGCCAAGCCGGCCGCGAAGTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(628-864)

UvrA DNA-binding domain (UvrA_DNA-bind)

(294-403)

UvrA interaction domain (UvrA_inter)

(131-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

56.508

93.936

0.531
  uvrA Streptococcus pneumoniae TIGR4

56.508

93.936

0.531
  uvrA Streptococcus pneumoniae D39

56.508

93.936

0.531