Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   QTN90_RS13355 Genome accession   NZ_CP128387
Coordinates   2735495..2735941 (+) Length   148 a.a.
NCBI ID   WP_001796473.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 22-042     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2730495..2740941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QTN90_RS13320 (QTN90_13320) - 2730989..2731192 (+) 204 WP_000087559.1 YqgQ family protein -
  QTN90_RS13325 (QTN90_13325) - 2731189..2732175 (+) 987 WP_000161315.1 ROK family glucokinase -
  QTN90_RS13330 (QTN90_13330) - 2732175..2732504 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  QTN90_RS13335 (QTN90_13335) - 2732501..2733124 (+) 624 WP_021285938.1 MBL fold metallo-hydrolase -
  QTN90_RS13340 (QTN90_13340) comGA 2733176..2734150 (+) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  QTN90_RS13345 (QTN90_13345) comGB 2734122..2735192 (+) 1071 WP_000776425.1 competence type IV pilus assembly protein ComGB Machinery gene
  QTN90_RS13350 (QTN90_13350) comGC 2735206..2735517 (+) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  QTN90_RS13355 (QTN90_13355) comGD 2735495..2735941 (+) 447 WP_001796473.1 competence type IV pilus minor pilin ComGD Machinery gene
  QTN90_RS13360 (QTN90_13360) comGE 2735928..2736227 (+) 300 WP_000844413.1 hypothetical protein Machinery gene
  QTN90_RS13365 (QTN90_13365) comGF 2736145..2736642 (+) 498 WP_001825340.1 competence type IV pilus minor pilin ComGF Machinery gene
  QTN90_RS13370 (QTN90_13370) - 2736739..2736885 (+) 147 WP_001789879.1 hypothetical protein -
  QTN90_RS13375 (QTN90_13375) - 2736875..2737399 (+) 525 WP_001015120.1 shikimate kinase -
  QTN90_RS13380 (QTN90_13380) gcvT 2737558..2738649 (+) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  QTN90_RS13385 (QTN90_13385) gcvPA 2738669..2740015 (+) 1347 WP_021285939.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17131.31 Da        Isoelectric Point: 10.3312

>NTDB_id=847145 QTN90_RS13355 WP_001796473.1 2735495..2735941(+) (comGD) [Staphylococcus aureus strain 22-042]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISLITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=847145 QTN90_RS13355 WP_001796473.1 2735495..2735941(+) (comGD) [Staphylococcus aureus strain 22-042]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAAATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTTTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTCTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACAATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

99.324

100

0.993
  comGD Staphylococcus aureus N315

99.324

100

0.993