Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   VM636_RS21150 Genome accession   NZ_CP144555
Coordinates   4823694..4825427 (-) Length   577 a.a.
NCBI ID   WP_053912519.1    Uniprot ID   -
Organism   Streptomyces sp. SCSIO 75703     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4818694..4830427
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VM636_RS21140 (VM636_21140) - 4820432..4821711 (+) 1280 Protein_4157 RNA polymerase sigma factor -
  VM636_RS21145 (VM636_21145) rcrQ 4821766..4823694 (-) 1929 WP_030419732.1 ABC transporter ATP-binding protein Regulator
  VM636_RS21150 (VM636_21150) rcrP 4823694..4825427 (-) 1734 WP_053912519.1 ABC transporter ATP-binding protein Regulator
  VM636_RS21155 (VM636_21155) - 4825629..4827080 (-) 1452 WP_030419730.1 FGGY family carbohydrate kinase -
  VM636_RS21160 (VM636_21160) - 4827135..4827440 (-) 306 WP_030419729.1 YtxH domain-containing protein -
  VM636_RS21180 (VM636_21180) - 4828138..4828497 (-) 360 WP_053912520.1 DUF6204 family protein -
  VM636_RS21185 (VM636_21185) - 4828719..4828886 (+) 168 WP_199809365.1 hypothetical protein -
  VM636_RS21190 (VM636_21190) - 4828926..4830332 (-) 1407 WP_030419727.1 GAF domain-containing protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62387.62 Da        Isoelectric Point: 7.3270

>NTDB_id=847141 VM636_RS21150 WP_053912519.1 4823694..4825427(-) (rcrP) [Streptomyces sp. SCSIO 75703]
MLIRLLRAHLRPYKKPIALVVALQFLQTCATLYLPTLNADIIDNGVVQGDTGYIMGFGAVMIAISLAQVVCNIGAVYFGA
RTAAALGRDVRGAVFDRVQSFSAREVGHFGAPSLITRTTNDVQQVQMLALMTFTLMVSAPIMCVGGVVLALGLDVPLSGV
LLGVIPVLAVSVTLIVRRLRPLFRSMQERLDTVNRVLREQITGNRVIRAFVRDTYEERRFRKANTELTDVALGTGNLLAL
MFPVVMTVVNLSSIAVVWFGAHRIDSGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLDTGSSVVP
PAAPVTVLHRRGRLELRGAGFRYPGAEEPVLRGVGLVARPGETTAVIGSTGSGKTTLLSLVPRLFDATEGEVLVDGVDVR
RLDPALLARTVGLVPQKPYLFAGTVATNLRYGNPDAGDEELWRALEVAQAKGFVERLEGGLDAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAELSRETAEATVVIVAQRVATIRDADRIVVLDEGQVVGVGRHRELMAGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=847141 VM636_RS21150 WP_053912519.1 4823694..4825427(-) (rcrP) [Streptomyces sp. SCSIO 75703]
GTGCTCATACGATTGCTGCGGGCCCATCTGAGGCCCTACAAGAAACCCATCGCCCTGGTGGTGGCGCTCCAGTTCCTCCA
GACCTGCGCCACCCTCTACCTGCCCACCCTGAACGCGGACATCATCGACAACGGTGTCGTCCAGGGCGACACCGGCTACA
TCATGGGTTTCGGCGCCGTGATGATCGCCATCTCGCTCGCCCAGGTGGTGTGCAACATCGGCGCCGTGTACTTCGGTGCC
CGCACCGCCGCGGCGCTCGGCCGGGACGTACGGGGAGCCGTCTTCGACCGGGTGCAGTCCTTCTCCGCGCGCGAGGTGGG
CCACTTCGGGGCGCCCTCGCTGATCACGCGGACCACCAACGACGTGCAGCAGGTCCAGATGCTGGCCCTGATGACGTTCA
CCCTGATGGTGTCGGCGCCGATCATGTGCGTCGGCGGTGTGGTGCTGGCGCTCGGCCTGGACGTGCCGCTGTCCGGGGTG
CTGCTCGGAGTGATCCCGGTGCTCGCGGTCAGCGTGACGCTGATCGTGCGGCGGCTGCGCCCGCTGTTCCGCTCGATGCA
GGAGCGCCTCGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTGATCCGGGCCTTCGTCCGGGACA
CGTACGAGGAGCGGCGCTTCCGCAAGGCCAACACGGAGCTGACGGACGTGGCGCTCGGCACCGGCAACCTGCTGGCGCTG
ATGTTCCCGGTGGTCATGACGGTGGTGAACCTGTCGTCGATCGCGGTGGTCTGGTTCGGCGCGCACCGCATCGACAGCGG
CGGCATGCAGATCGGCGACCTGACCGCCTTCCTCGCCTACCTGATGCAGATCGTCATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTGTGCGCCGAGCGCATCCAGGAGGTCCTGGACACCGGGAGCAGTGTGGTGCCG
CCGGCCGCGCCCGTCACCGTACTGCACCGGCGGGGCCGCCTGGAGCTGCGGGGCGCGGGCTTCCGCTACCCCGGCGCCGA
GGAGCCCGTGCTGCGCGGCGTCGGCCTGGTGGCGCGGCCCGGCGAGACGACCGCCGTCATCGGGTCGACCGGCAGCGGCA
AGACCACGCTGCTCTCCCTGGTGCCCCGGCTCTTCGACGCGACCGAGGGCGAGGTGCTGGTCGACGGGGTGGACGTACGC
CGCCTCGACCCGGCGCTGCTGGCCCGCACCGTGGGCCTGGTGCCGCAGAAGCCGTACCTGTTCGCCGGCACGGTGGCGAC
GAACCTGCGCTACGGCAACCCGGACGCCGGTGACGAGGAGCTGTGGCGGGCGCTGGAGGTGGCGCAGGCCAAGGGGTTCG
TCGAGCGGCTGGAGGGCGGGCTGGACGCGCCCATCGCGCAGGGCGGCACCAACGTCTCCGGCGGCCAGCGGCAGCGGCTC
GCCATCGCCCGGACGCTGGTGCAGCGTCCGGAGATCTACCTCTTCGACGACTCCTTCTCCGCACTGGACTACGCGACGGA
CGCGGCGTTGCGCGCCGAGCTGTCCCGGGAGACGGCCGAGGCGACCGTGGTGATCGTGGCGCAGCGGGTGGCGACGATCC
GGGACGCCGACCGGATCGTCGTGCTGGACGAGGGCCAGGTGGTCGGTGTCGGCCGGCACCGCGAACTGATGGCCGGGAAC
GAGACGTACCGGGAGATCGTGCTCTCCCAGCTCACGGAAGCGGAGGCTGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(353-498)

ABC transporter transmembrane region (ABC_membrane)

(19-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.254

97.574

0.383