Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   VM636_RS21145 Genome accession   NZ_CP144555
Coordinates   4821766..4823694 (-) Length   642 a.a.
NCBI ID   WP_030419732.1    Uniprot ID   -
Organism   Streptomyces sp. SCSIO 75703     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4816766..4828694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VM636_RS21130 (VM636_21130) - 4817014..4818279 (+) 1266 WP_030419735.1 FAD-dependent oxidoreductase -
  VM636_RS21135 (VM636_21135) dnaG 4818368..4820296 (+) 1929 WP_053912517.1 DNA primase -
  VM636_RS21140 (VM636_21140) - 4820432..4821711 (+) 1280 Protein_4157 RNA polymerase sigma factor -
  VM636_RS21145 (VM636_21145) rcrQ 4821766..4823694 (-) 1929 WP_030419732.1 ABC transporter ATP-binding protein Regulator
  VM636_RS21150 (VM636_21150) rcrP 4823694..4825427 (-) 1734 WP_053912519.1 ABC transporter ATP-binding protein Regulator
  VM636_RS21155 (VM636_21155) - 4825629..4827080 (-) 1452 WP_030419730.1 FGGY family carbohydrate kinase -
  VM636_RS21160 (VM636_21160) - 4827135..4827440 (-) 306 WP_030419729.1 YtxH domain-containing protein -
  VM636_RS21180 (VM636_21180) - 4828138..4828497 (-) 360 WP_053912520.1 DUF6204 family protein -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69448.82 Da        Isoelectric Point: 5.4305

>NTDB_id=847140 VM636_RS21145 WP_030419732.1 4821766..4823694(-) (rcrQ) [Streptomyces sp. SCSIO 75703]
MAGPGGRMMAGAGPDQRSMDFVGSGKRLIGRFRPERVTIWALLACVVVSVGLSVIGPKILGKATDLVFGGIVGRDLPAGA
TKEQVLESMRARGEDRIADMLRGTDFTPGRGIDFTAVGQVLLLALGTFLVAGLLMAVATRLVNRAVNRTMFRLREDVQTK
LSRLPLSYFDSRQRGEVLSRATNDIDNMGQTLQQSMGQLINSVLTVLGVLVMMFYVSWILALVALVTVPLSFVVATRVGK
RSQPHFVQQWRSTGELNAHIEEMYTGHTLVKVFGRQEESAQQFAEQNEALYEAGFRAQFNSGIMQPLMMFVSNLNYVLIA
VVGGLRVATGTLSIGDVQAFIQYSRQFSMPLTQIASMANLVQSGVASAERVFELLDAEEQSADPVPGVRPEELRGRVALE
HVSFRYDPGTPLIEDLSLTVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVSGGRITLDGVDIAAMSRDELRAGIGMVLQDT
WLFGGTIAENIAYGARREVTRGEIEEAARAAHADRFVRTLPDGYDTVLDDEGTGVSAGEKQLVTIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKAMAKLAHGRTAFVIAHRLSTIRDADTILVMEDGSIVEQGGHAELLAAGGAYARLYKAQFAEAVAE
VE

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=847140 VM636_RS21145 WP_030419732.1 4821766..4823694(-) (rcrQ) [Streptomyces sp. SCSIO 75703]
ATGGCCGGGCCTGGGGGGCGCATGATGGCCGGGGCCGGTCCCGACCAGCGGTCGATGGACTTCGTGGGATCGGGCAAGCG
GCTCATCGGCCGGTTCCGGCCGGAACGGGTGACGATCTGGGCGCTGCTGGCCTGCGTGGTCGTCAGCGTCGGCCTGAGCG
TGATCGGGCCGAAGATCCTCGGCAAGGCCACCGACCTGGTCTTCGGCGGCATCGTCGGCCGGGACCTGCCGGCCGGGGCC
ACGAAGGAACAGGTCCTGGAGTCGATGCGGGCGCGCGGCGAGGACCGGATCGCCGACATGCTGCGCGGCACCGACTTCAC
GCCGGGCCGGGGCATCGACTTCACCGCCGTCGGCCAGGTGCTGCTGCTCGCGCTCGGCACCTTCCTGGTGGCGGGGCTGC
TGATGGCGGTGGCGACCCGGCTGGTGAACCGGGCGGTCAACCGGACGATGTTCCGGCTGCGGGAGGACGTGCAGACGAAG
CTGTCGCGGCTGCCGCTATCGTACTTCGACAGCCGTCAGCGCGGTGAGGTGCTGTCCCGGGCGACCAACGACATCGACAA
CATGGGCCAGACCCTCCAGCAGTCGATGGGCCAGTTGATCAACTCGGTGCTGACCGTGCTCGGCGTGCTGGTGATGATGT
TCTACGTCTCCTGGATTCTCGCCCTGGTGGCGCTGGTGACGGTGCCGCTGTCGTTCGTGGTGGCGACCCGGGTGGGCAAG
CGGTCGCAGCCGCACTTCGTGCAGCAGTGGCGCTCCACGGGCGAGCTGAACGCGCACATCGAGGAGATGTACACCGGGCA
CACCCTGGTGAAGGTGTTCGGCCGGCAGGAGGAGTCCGCGCAGCAGTTCGCCGAGCAGAACGAGGCGCTGTACGAGGCCG
GGTTCCGGGCGCAGTTCAACAGCGGGATCATGCAGCCGCTGATGATGTTCGTGTCGAACCTGAACTACGTGCTGATCGCG
GTGGTCGGCGGGCTGCGGGTGGCCACGGGCACGCTGTCCATCGGCGACGTGCAGGCGTTCATCCAGTACTCCCGGCAGTT
CTCGATGCCGCTGACGCAGATCGCGTCGATGGCGAACCTGGTGCAGTCGGGCGTGGCCTCGGCGGAGCGGGTCTTCGAAC
TCCTCGACGCCGAGGAGCAGTCGGCGGACCCCGTCCCGGGCGTGCGGCCGGAGGAGCTGCGGGGACGGGTCGCGCTGGAG
CACGTGTCGTTCCGTTACGACCCCGGCACGCCGCTGATCGAGGACCTGTCGCTCACCGTGGAGCCGGGCCACACGGTGGC
CATCGTGGGACCGACGGGCGCGGGCAAGACCACGCTGGTCAACCTGCTGATGCGGTTCTACGAGGTCTCCGGCGGGCGGA
TCACCCTGGACGGCGTCGACATCGCGGCGATGTCCCGGGACGAACTGCGCGCCGGGATCGGGATGGTGCTCCAGGACACC
TGGCTGTTCGGCGGGACCATCGCGGAGAACATCGCCTACGGCGCCCGGCGCGAGGTCACGCGCGGGGAGATCGAGGAGGC
GGCGCGGGCGGCGCACGCCGACCGGTTCGTGCGGACGCTGCCCGACGGCTACGACACGGTGCTGGACGACGAGGGCACGG
GGGTGAGCGCCGGCGAGAAGCAGCTCGTCACGATCGCGCGGGCCTTCCTGTCCGACCCGGTGATCCTGGTGCTGGACGAG
GCGACGAGTTCGGTGGACACCCGCACCGAGGTGCTGATCCAGAAGGCGATGGCCAAACTGGCGCACGGGCGGACGGCGTT
CGTCATCGCGCACCGGCTCTCCACCATCCGGGACGCGGACACGATCCTCGTGATGGAGGACGGGTCGATCGTGGAACAGG
GCGGGCACGCCGAGCTGCTGGCGGCCGGCGGGGCCTACGCGCGGCTGTACAAGGCGCAGTTCGCCGAGGCGGTGGCCGAG
GTCGAGTAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(41-351)

ABC transporter (ABC_tran)

(414-563)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

44.364

85.67

0.38