Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | VM636_RS13425 | Genome accession | NZ_CP144555 |
| Coordinates | 3094448..3096973 (-) | Length | 841 a.a. |
| NCBI ID | WP_030421961.1 | Uniprot ID | - |
| Organism | Streptomyces sp. SCSIO 75703 | ||
| Function | degradation of ComK; degradation of DegU (predicted from homology) Competence regulation |
||
Genomic Context
Location: 3089448..3101973
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VM636_RS13410 (VM636_13410) | - | 3089489..3090094 (+) | 606 | WP_030421964.1 | TetR/AcrR family transcriptional regulator | - |
| VM636_RS13415 (VM636_13415) | - | 3090109..3090789 (-) | 681 | WP_030421963.1 | M23 family metallopeptidase | - |
| VM636_RS13420 (VM636_13420) | - | 3091268..3094333 (+) | 3066 | WP_338484538.1 | NACHT domain-containing protein | - |
| VM636_RS13425 (VM636_13425) | clpC | 3094448..3096973 (-) | 2526 | WP_030421961.1 | ATP-dependent Clp protease ATP-binding subunit | Regulator |
| VM636_RS13430 (VM636_13430) | - | 3097404..3098081 (+) | 678 | WP_234340485.1 | SCO3374 family protein | - |
| VM636_RS13435 (VM636_13435) | - | 3098119..3098454 (-) | 336 | WP_030421959.1 | Lsr2 family protein | - |
| VM636_RS13440 (VM636_13440) | - | 3098729..3099238 (-) | 510 | WP_030421958.1 | amino-acid N-acetyltransferase | - |
| VM636_RS13445 (VM636_13445) | - | 3099248..3099787 (-) | 540 | WP_267882422.1 | BlaI/MecI/CopY family transcriptional regulator | - |
| VM636_RS13450 (VM636_13450) | - | 3099940..3100119 (-) | 180 | WP_030421956.1 | hypothetical protein | - |
| VM636_RS13455 (VM636_13455) | - | 3100143..3100775 (-) | 633 | WP_078856128.1 | hypothetical protein | - |
| VM636_RS13460 (VM636_13460) | - | 3101085..3101882 (-) | 798 | WP_030421954.1 | type III pantothenate kinase | - |
Sequence
Protein
Download Length: 841 a.a. Molecular weight: 92941.11 Da Isoelectric Point: 5.7459
>NTDB_id=847122 VM636_RS13425 WP_030421961.1 3094448..3096973(-) (clpC) [Streptomyces sp. SCSIO 75703]
MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEAVRQQVEEIIGQGQQAPSGHIPF
TPRAKKVLELSLREALQLGHNYIGTEHILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSGYQGKETATAGGPAEGT
PSTSLVLDQFGRNLTQAARESKLDPVIGREKEIERVMQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQAIVKGEVPETLKD
KHLYTLDLGALVAGSRYRGDFEERLKKVLKEIRTRGDIILFIDELHTLVGAGAAEGAIDAASILKPMLARGELQTIGATT
LDEYRKHLEKDAALERRFQPIQVAEPSLPHTIEILKGLRDRYEAHHRVSITDEALVQAATLADRYISDRFLPDKAIDLID
EAGSRMRIRRMTAPPDLREFDEKIAGVRRDKESAIDSQDFEKAASLRDKEKQLLAAKAKREKEWKAGDMDVVAEVDGELI
AEVLATATGIPVFKLTEEESSRLLRMEDELHKRVIGQIDAVKALSRAIRRTRAGLKDPKRPGGSFIFAGPSGVGKTELSK
ALAEFLFGDEDALISLDMSEFSEKHTVSRLFGSPPGYVGYEEGGQLTEKVRRKPFSVVLFDEVEKAHPDIFNSLLQILED
GRLTDSQGRVVDFKNTVIIMTTNLGTRDISKGFNLGFAAAGDTKTNYERMKNKVSDELKQHFRPEFLNRVDDVVVFPQLT
QADILAIVDLMITKVDERLKDRDMGIELSQTAKELLSQKGYDPVLGARPLRRTIQREIEDTLSEKILFGELRPGHIVVVD
TEGEGEAKTFTFRGEEQSALPDVPPIEQAAGGAGPNLSKEA
MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEAVRQQVEEIIGQGQQAPSGHIPF
TPRAKKVLELSLREALQLGHNYIGTEHILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSGYQGKETATAGGPAEGT
PSTSLVLDQFGRNLTQAARESKLDPVIGREKEIERVMQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQAIVKGEVPETLKD
KHLYTLDLGALVAGSRYRGDFEERLKKVLKEIRTRGDIILFIDELHTLVGAGAAEGAIDAASILKPMLARGELQTIGATT
LDEYRKHLEKDAALERRFQPIQVAEPSLPHTIEILKGLRDRYEAHHRVSITDEALVQAATLADRYISDRFLPDKAIDLID
EAGSRMRIRRMTAPPDLREFDEKIAGVRRDKESAIDSQDFEKAASLRDKEKQLLAAKAKREKEWKAGDMDVVAEVDGELI
AEVLATATGIPVFKLTEEESSRLLRMEDELHKRVIGQIDAVKALSRAIRRTRAGLKDPKRPGGSFIFAGPSGVGKTELSK
ALAEFLFGDEDALISLDMSEFSEKHTVSRLFGSPPGYVGYEEGGQLTEKVRRKPFSVVLFDEVEKAHPDIFNSLLQILED
GRLTDSQGRVVDFKNTVIIMTTNLGTRDISKGFNLGFAAAGDTKTNYERMKNKVSDELKQHFRPEFLNRVDDVVVFPQLT
QADILAIVDLMITKVDERLKDRDMGIELSQTAKELLSQKGYDPVLGARPLRRTIQREIEDTLSEKILFGELRPGHIVVVD
TEGEGEAKTFTFRGEEQSALPDVPPIEQAAGGAGPNLSKEA
Nucleotide
Download Length: 2526 bp
>NTDB_id=847122 VM636_RS13425 WP_030421961.1 3094448..3096973(-) (clpC) [Streptomyces sp. SCSIO 75703]
ATGTTCGAGAGGTTCACCGACCGCGCGCGGCGGGTTGTCGTCCTGGCTCAGGAAGAAGCCCGGATGCTCAACCACAACTA
CATCGGCACCGAGCACATCCTCCTGGGCCTGATCCACGAGGGTGAGGGTGTCGCCGCCAAGGCCCTTGAGAGCCTCGGGA
TTTCGCTCGAGGCGGTCCGCCAGCAGGTGGAGGAGATCATCGGCCAGGGCCAGCAGGCCCCGTCGGGTCACATCCCCTTC
ACCCCCCGTGCCAAGAAGGTCCTGGAGCTGTCGCTCCGGGAGGCCCTTCAGCTCGGTCACAACTACATCGGCACCGAGCA
CATCCTGCTCGGCCTGATCCGCGAGGGCGAGGGCGTCGCCGCCCAGGTCCTGGTGAAGCTGGGTGCCGACCTCAACCGGG
TGCGGCAGCAGGTCATCCAGCTGCTCTCCGGTTACCAGGGCAAGGAGACCGCCACCGCCGGCGGTCCTGCCGAGGGCACC
CCCTCCACGTCCCTGGTCCTCGACCAGTTCGGCCGGAACCTCACCCAGGCGGCCCGCGAATCCAAGCTCGACCCGGTCAT
CGGGCGCGAGAAGGAGATCGAGCGGGTCATGCAGGTGCTGTCCCGCCGCACCAAGAACAACCCGGTGCTGATCGGTGAGC
CCGGCGTCGGCAAGACCGCCGTCGTCGAGGGCCTCGCGCAGGCCATCGTCAAGGGCGAGGTGCCCGAGACCCTCAAGGAC
AAGCACCTCTACACCCTCGACCTCGGCGCGCTGGTGGCCGGCTCCCGCTACCGCGGTGACTTCGAGGAGCGCCTGAAGAA
GGTGCTCAAGGAGATCCGCACCCGGGGCGACATCATCCTGTTCATCGACGAGCTGCACACGCTGGTCGGCGCGGGTGCCG
CCGAGGGCGCCATCGACGCCGCGTCGATCCTCAAGCCGATGCTGGCCCGCGGTGAGCTCCAGACCATCGGTGCCACCACG
CTGGACGAGTACCGCAAGCACCTGGAGAAGGACGCGGCCCTCGAGCGCCGCTTCCAGCCGATCCAGGTCGCGGAGCCGTC
CCTGCCGCACACGATCGAGATCCTCAAGGGCCTGCGCGACCGGTACGAGGCCCACCACCGGGTCTCCATCACCGACGAGG
CGCTGGTCCAGGCCGCCACGCTGGCCGACCGGTACATCTCGGACCGCTTCCTGCCGGACAAGGCGATCGACCTGATCGAC
GAGGCCGGCTCCCGGATGCGCATCCGCCGGATGACCGCGCCGCCGGACCTGCGCGAGTTCGACGAGAAGATCGCCGGCGT
CCGCCGGGACAAGGAGTCCGCGATCGACTCGCAGGACTTCGAGAAGGCCGCCTCCCTGCGCGACAAGGAGAAGCAGCTCC
TCGCCGCCAAGGCCAAGCGGGAGAAGGAGTGGAAGGCCGGCGACATGGACGTCGTCGCCGAGGTCGACGGCGAGCTGATC
GCCGAGGTCCTGGCCACGGCCACCGGCATCCCGGTCTTCAAGCTCACCGAGGAGGAGTCGTCCCGCCTGCTGCGCATGGA
GGACGAGCTCCACAAGCGGGTCATCGGCCAGATCGACGCCGTCAAGGCGCTGTCCCGGGCGATCCGCCGCACGCGCGCCG
GTCTGAAGGACCCGAAGCGCCCCGGTGGCTCGTTCATCTTCGCCGGCCCCTCGGGTGTCGGTAAGACCGAGCTGTCCAAG
GCGCTCGCGGAGTTCCTCTTCGGCGACGAGGACGCGCTGATCTCCCTCGACATGTCGGAGTTCAGCGAGAAGCACACGGT
CTCGCGCCTCTTCGGCTCGCCCCCCGGTTACGTGGGGTACGAGGAGGGCGGCCAGCTCACGGAGAAGGTCCGCCGCAAGC
CGTTCTCGGTCGTCCTCTTCGACGAGGTCGAGAAGGCCCACCCGGACATCTTCAACTCGCTGCTGCAGATCCTGGAGGAC
GGTCGCCTGACCGACTCCCAGGGCCGGGTCGTGGACTTCAAGAACACGGTCATCATCATGACGACCAACCTCGGCACCCG
GGACATCTCCAAGGGCTTCAACCTGGGCTTCGCCGCCGCCGGCGACACGAAGACCAACTACGAGCGCATGAAGAACAAGG
TGTCGGACGAGCTGAAGCAGCACTTCCGCCCCGAGTTCCTCAACCGTGTCGACGACGTGGTCGTCTTCCCGCAGCTCACG
CAGGCCGACATCCTCGCGATCGTCGACCTGATGATCACCAAGGTGGACGAGCGCCTCAAGGACCGGGACATGGGCATCGA
GCTCTCCCAGACCGCCAAGGAGCTGCTGTCCCAGAAGGGCTACGACCCCGTGCTGGGTGCCCGGCCGCTGCGCCGCACCA
TCCAGCGCGAGATCGAGGACACGCTCTCGGAGAAGATCCTCTTCGGCGAGCTGCGCCCCGGTCACATCGTGGTCGTGGAC
ACCGAGGGCGAGGGCGAGGCCAAGACCTTCACCTTCCGGGGTGAGGAGCAGTCGGCGCTGCCCGACGTCCCGCCGATCGA
GCAGGCGGCCGGCGGAGCCGGTCCGAACCTGAGCAAGGAGGCGTGA
ATGTTCGAGAGGTTCACCGACCGCGCGCGGCGGGTTGTCGTCCTGGCTCAGGAAGAAGCCCGGATGCTCAACCACAACTA
CATCGGCACCGAGCACATCCTCCTGGGCCTGATCCACGAGGGTGAGGGTGTCGCCGCCAAGGCCCTTGAGAGCCTCGGGA
TTTCGCTCGAGGCGGTCCGCCAGCAGGTGGAGGAGATCATCGGCCAGGGCCAGCAGGCCCCGTCGGGTCACATCCCCTTC
ACCCCCCGTGCCAAGAAGGTCCTGGAGCTGTCGCTCCGGGAGGCCCTTCAGCTCGGTCACAACTACATCGGCACCGAGCA
CATCCTGCTCGGCCTGATCCGCGAGGGCGAGGGCGTCGCCGCCCAGGTCCTGGTGAAGCTGGGTGCCGACCTCAACCGGG
TGCGGCAGCAGGTCATCCAGCTGCTCTCCGGTTACCAGGGCAAGGAGACCGCCACCGCCGGCGGTCCTGCCGAGGGCACC
CCCTCCACGTCCCTGGTCCTCGACCAGTTCGGCCGGAACCTCACCCAGGCGGCCCGCGAATCCAAGCTCGACCCGGTCAT
CGGGCGCGAGAAGGAGATCGAGCGGGTCATGCAGGTGCTGTCCCGCCGCACCAAGAACAACCCGGTGCTGATCGGTGAGC
CCGGCGTCGGCAAGACCGCCGTCGTCGAGGGCCTCGCGCAGGCCATCGTCAAGGGCGAGGTGCCCGAGACCCTCAAGGAC
AAGCACCTCTACACCCTCGACCTCGGCGCGCTGGTGGCCGGCTCCCGCTACCGCGGTGACTTCGAGGAGCGCCTGAAGAA
GGTGCTCAAGGAGATCCGCACCCGGGGCGACATCATCCTGTTCATCGACGAGCTGCACACGCTGGTCGGCGCGGGTGCCG
CCGAGGGCGCCATCGACGCCGCGTCGATCCTCAAGCCGATGCTGGCCCGCGGTGAGCTCCAGACCATCGGTGCCACCACG
CTGGACGAGTACCGCAAGCACCTGGAGAAGGACGCGGCCCTCGAGCGCCGCTTCCAGCCGATCCAGGTCGCGGAGCCGTC
CCTGCCGCACACGATCGAGATCCTCAAGGGCCTGCGCGACCGGTACGAGGCCCACCACCGGGTCTCCATCACCGACGAGG
CGCTGGTCCAGGCCGCCACGCTGGCCGACCGGTACATCTCGGACCGCTTCCTGCCGGACAAGGCGATCGACCTGATCGAC
GAGGCCGGCTCCCGGATGCGCATCCGCCGGATGACCGCGCCGCCGGACCTGCGCGAGTTCGACGAGAAGATCGCCGGCGT
CCGCCGGGACAAGGAGTCCGCGATCGACTCGCAGGACTTCGAGAAGGCCGCCTCCCTGCGCGACAAGGAGAAGCAGCTCC
TCGCCGCCAAGGCCAAGCGGGAGAAGGAGTGGAAGGCCGGCGACATGGACGTCGTCGCCGAGGTCGACGGCGAGCTGATC
GCCGAGGTCCTGGCCACGGCCACCGGCATCCCGGTCTTCAAGCTCACCGAGGAGGAGTCGTCCCGCCTGCTGCGCATGGA
GGACGAGCTCCACAAGCGGGTCATCGGCCAGATCGACGCCGTCAAGGCGCTGTCCCGGGCGATCCGCCGCACGCGCGCCG
GTCTGAAGGACCCGAAGCGCCCCGGTGGCTCGTTCATCTTCGCCGGCCCCTCGGGTGTCGGTAAGACCGAGCTGTCCAAG
GCGCTCGCGGAGTTCCTCTTCGGCGACGAGGACGCGCTGATCTCCCTCGACATGTCGGAGTTCAGCGAGAAGCACACGGT
CTCGCGCCTCTTCGGCTCGCCCCCCGGTTACGTGGGGTACGAGGAGGGCGGCCAGCTCACGGAGAAGGTCCGCCGCAAGC
CGTTCTCGGTCGTCCTCTTCGACGAGGTCGAGAAGGCCCACCCGGACATCTTCAACTCGCTGCTGCAGATCCTGGAGGAC
GGTCGCCTGACCGACTCCCAGGGCCGGGTCGTGGACTTCAAGAACACGGTCATCATCATGACGACCAACCTCGGCACCCG
GGACATCTCCAAGGGCTTCAACCTGGGCTTCGCCGCCGCCGGCGACACGAAGACCAACTACGAGCGCATGAAGAACAAGG
TGTCGGACGAGCTGAAGCAGCACTTCCGCCCCGAGTTCCTCAACCGTGTCGACGACGTGGTCGTCTTCCCGCAGCTCACG
CAGGCCGACATCCTCGCGATCGTCGACCTGATGATCACCAAGGTGGACGAGCGCCTCAAGGACCGGGACATGGGCATCGA
GCTCTCCCAGACCGCCAAGGAGCTGCTGTCCCAGAAGGGCTACGACCCCGTGCTGGGTGCCCGGCCGCTGCGCCGCACCA
TCCAGCGCGAGATCGAGGACACGCTCTCGGAGAAGATCCTCTTCGGCGAGCTGCGCCCCGGTCACATCGTGGTCGTGGAC
ACCGAGGGCGAGGGCGAGGCCAAGACCTTCACCTTCCGGGGTGAGGAGCAGTCGGCGCTGCCCGACGTCCCGCCGATCGA
GCAGGCGGCCGGCGGAGCCGGTCCGAACCTGAGCAAGGAGGCGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
61.235 |
96.314 |
0.59 |
| clpC | Streptococcus mutans UA159 |
44.217 |
98.692 |
0.436 |
| clpC | Streptococcus thermophilus LMD-9 |
43.047 |
98.335 |
0.423 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
43.827 |
96.314 |
0.422 |
| clpC | Streptococcus pneumoniae Rx1 |
44.209 |
95.482 |
0.422 |
| clpC | Streptococcus pneumoniae D39 |
44.209 |
95.482 |
0.422 |
| clpC | Streptococcus pneumoniae TIGR4 |
44.236 |
94.887 |
0.42 |
| clpE | Streptococcus mutans UA159 |
53.994 |
74.435 |
0.402 |
| clpE | Streptococcus pneumoniae TIGR4 |
52.97 |
74.078 |
0.392 |
| clpE | Streptococcus pneumoniae D39 |
52.809 |
74.078 |
0.391 |
| clpE | Streptococcus pneumoniae R6 |
52.809 |
74.078 |
0.391 |
| clpE | Streptococcus pneumoniae Rx1 |
52.809 |
74.078 |
0.391 |
| clpC | Lactococcus lactis subsp. cremoris KW2 |
52.742 |
73.722 |
0.389 |
| clpC | Streptococcus thermophilus LMG 18311 |
49.085 |
78.002 |
0.383 |