Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   VM636_RS10540 Genome accession   NZ_CP144555
Coordinates   2444315..2445298 (-) Length   327 a.a.
NCBI ID   WP_030419061.1    Uniprot ID   -
Organism   Streptomyces sp. SCSIO 75703     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2439315..2450298
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VM636_RS10525 (VM636_10525) - 2440327..2440521 (-) 195 WP_030419064.1 hypothetical protein -
  VM636_RS10530 (VM636_10530) - 2440723..2442864 (+) 2142 WP_338484296.1 prolyl oligopeptidase family serine peptidase -
  VM636_RS10535 (VM636_10535) - 2443093..2444322 (-) 1230 WP_037857631.1 dipeptide ABC transporter ATP-binding protein -
  VM636_RS10540 (VM636_10540) amiE 2444315..2445298 (-) 984 WP_030419061.1 ABC transporter ATP-binding protein Regulator
  VM636_RS10545 (VM636_10545) - 2445307..2446284 (-) 978 WP_338484297.1 ABC transporter permease -
  VM636_RS10550 (VM636_10550) - 2446277..2447200 (-) 924 WP_030419059.1 ABC transporter permease -
  VM636_RS10555 (VM636_10555) - 2447209..2448834 (-) 1626 WP_338484298.1 ABC transporter substrate-binding protein -
  VM636_RS10560 (VM636_10560) - 2449014..2450135 (-) 1122 WP_338484299.1 dipeptide ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 327 a.a.        Molecular weight: 35919.70 Da        Isoelectric Point: 8.0698

>NTDB_id=847115 VM636_RS10540 WP_030419061.1 2444315..2445298(-) (amiE) [Streptomyces sp. SCSIO 75703]
MLLEVRDLHVEFRTRDGVAKAVNGVGYGVDAGETLAVLGESGSGKSVTAQTVMGILDTPPGKVTGGQILFEGRDLLTMKE
EERRKVRGAEMAMIFQDALSSLNPVLTVGDQLGEMFTVHRGMSRKDARAKAVELMDRVRIPGARERVRQYPHQFSGGMRQ
RIMIAMAIALEPKLIIADEPTTALDVTVQAQVMDLLAELRREYRMGLILITHDLGVVADVADKIAVMYAGRIVETASVHD
IYKAPAHPYTRGLLDSIPRLDQKGRQLYAIKGLPPNLTRIPAGCAFHPRCPMARDVCRTDVPPLYEVTGAPAERGSACHF
WRECLHG

Nucleotide


Download         Length: 984 bp        

>NTDB_id=847115 VM636_RS10540 WP_030419061.1 2444315..2445298(-) (amiE) [Streptomyces sp. SCSIO 75703]
ATGCTGCTCGAAGTGCGCGACCTGCACGTGGAGTTCCGCACCCGGGACGGGGTCGCCAAGGCCGTCAACGGGGTCGGCTA
CGGCGTCGACGCGGGGGAGACCCTGGCCGTGCTCGGCGAGTCCGGCTCCGGAAAGTCCGTCACCGCCCAGACCGTCATGG
GCATCCTCGACACCCCGCCCGGCAAGGTCACCGGCGGGCAGATCCTCTTCGAGGGCAGGGACCTGCTGACCATGAAGGAG
GAGGAGCGCCGCAAGGTGCGCGGCGCCGAGATGGCGATGATCTTCCAGGACGCGCTGTCCTCCCTCAACCCCGTGCTCAC
CGTCGGCGACCAGCTCGGCGAGATGTTCACCGTGCACCGCGGCATGTCCCGCAAGGACGCCCGCGCCAAGGCGGTCGAGC
TGATGGACCGGGTGCGCATCCCGGGCGCCCGGGAGCGGGTGCGGCAGTACCCGCACCAGTTCTCCGGCGGCATGCGCCAG
CGCATCATGATCGCGATGGCGATCGCCCTGGAGCCCAAGCTGATCATCGCCGACGAGCCGACCACCGCCCTGGACGTCAC
CGTCCAGGCCCAGGTGATGGACCTGCTCGCGGAGCTGCGGCGCGAGTACCGCATGGGGCTGATCCTCATCACCCACGACC
TCGGCGTGGTCGCCGACGTGGCCGACAAGATCGCCGTGATGTACGCCGGGCGGATCGTGGAGACCGCCTCCGTGCACGAC
ATCTACAAGGCCCCGGCCCACCCGTACACCCGGGGCCTGCTCGACTCCATCCCGCGTCTGGACCAGAAAGGCCGGCAGCT
CTACGCCATCAAGGGCCTGCCGCCCAACCTCACCCGCATCCCTGCCGGCTGCGCCTTCCACCCCCGCTGCCCCATGGCGC
GGGACGTCTGCCGCACCGACGTGCCCCCGCTGTACGAGGTGACCGGCGCGCCGGCCGAGCGGGGCAGCGCCTGCCACTTC
TGGAGGGAGTGCCTGCATGGCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(23-181)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-297)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

46.25

97.859

0.453
  amiE Streptococcus thermophilus LMD-9

46.25

97.859

0.453
  amiE Streptococcus salivarius strain HSISS4

47.573

94.495

0.45
  oppD Streptococcus mutans UA159

45.631

94.495

0.431