Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | VM636_RS06310 | Genome accession | NZ_CP144555 |
| Coordinates | 1497125..1499638 (-) | Length | 837 a.a. |
| NCBI ID | WP_030421431.1 | Uniprot ID | - |
| Organism | Streptomyces sp. SCSIO 75703 | ||
| Function | degradation of ComK; degradation of DegU (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1492125..1504638
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VM636_RS06290 (VM636_06290) | - | 1492803..1494017 (-) | 1215 | WP_338483757.1 | cupin domain-containing protein | - |
| VM636_RS06295 (VM636_06295) | - | 1494812..1495930 (+) | 1119 | WP_051821429.1 | CE1758 family FMN-dependent luciferase-like monooxygenase | - |
| VM636_RS06300 (VM636_06300) | - | 1495938..1496546 (+) | 609 | WP_037858650.1 | CE1759 family FMN reductase | - |
| VM636_RS06305 (VM636_06305) | - | 1496611..1497069 (-) | 459 | WP_030421430.1 | GreA/GreB family elongation factor | - |
| VM636_RS06310 (VM636_06310) | clpC | 1497125..1499638 (-) | 2514 | WP_030421431.1 | ATP-dependent Clp protease ATP-binding subunit | Regulator |
| VM636_RS06315 (VM636_06315) | - | 1499970..1500659 (+) | 690 | WP_338483761.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| VM636_RS06320 (VM636_06320) | - | 1501069..1502334 (+) | 1266 | WP_030421433.1 | MFS transporter | - |
| VM636_RS06325 (VM636_06325) | - | 1502331..1502642 (+) | 312 | WP_053914732.1 | sulfurtransferase TusA family protein | - |
| VM636_RS06330 (VM636_06330) | - | 1502783..1502989 (+) | 207 | Protein_1260 | thiamine pyrophosphate-binding protein | - |
| VM636_RS06335 (VM636_06335) | - | 1502988..1503974 (-) | 987 | WP_030421435.1 | ferric reductase-like transmembrane domain-containing protein | - |
Sequence
Protein
Download Length: 837 a.a. Molecular weight: 90724.05 Da Isoelectric Point: 4.8222
>NTDB_id=847101 VM636_RS06310 WP_030421431.1 1497125..1499638(-) (clpC) [Streptomyces sp. SCSIO 75703]
MSLSSMGFGPSDPFGELLGRFFGMSPGSSPPAVQRVPVGRLLSQSSRELLRLAAERAAGDGATDLDTEHLLWAATRVEPS
RGLLAQAGVDPDGLATRVAEVLPRESAEPSAEPGLTPAAKRTLAEAYARSQAAGASYIGPEHLLGALVEDGQTGAARLLT
AQGEDVNRLEGLTGAPQRGPGRDQAGERGEAATTLEEFGRDLTAEARAGRLDPVVGRAEEIEQTVEILSRRSKNNPVLIG
EPGVGKTAIVEGLAQRVVAGEVPDTLKDRRVIALDLSAMVAGAQYRGQFEERLKKVIEEVRRARGEIMLFIDELHTVVGA
GATGEGAMDAGNMLKPALARGELRVVGATTIDEYRRYVEKDAALERRFQPVMVPEPSVEETVQILEGLRDAYEAHHQVRF
ADGALAAAAELSDRYVSDRFLPDKAIDVMDQAGARVRLRSAGRSTEVVGREDRIARLRREQEAAVAAEDYGEAARLKQEI
AEVEGELAGIEERREGVVSVTAADIADVISRRTGIPVSQLTASEKERLLRLEEEMHSRIVGQDEAVSAVSRAVRRSRAGM
GDPDRPVGSFLFLGPTGVGKTELAKTLAELLFGDEDRMVRFDMSEFQEKHTVARLVGAPPGYVGYEEAGQLTEKVRRQPY
SVVLFDEIEKAHPDVFNTLLQILDDGRLTDGQGRTVDFRHCVVVMTSNIGAHRILDRHGDVSDLGDTLMRELRDRFPPEF
LNRIDDIIVFHGLTEADLGRIVDHLLAHSERRVHAQGLTLEVTDAARRLLAAHGHQPEFGARPLRRTIQTELDNRVADLL
LAGEADPGDTIVADVLDDSLHCTVRKGTAPDEDASAA
MSLSSMGFGPSDPFGELLGRFFGMSPGSSPPAVQRVPVGRLLSQSSRELLRLAAERAAGDGATDLDTEHLLWAATRVEPS
RGLLAQAGVDPDGLATRVAEVLPRESAEPSAEPGLTPAAKRTLAEAYARSQAAGASYIGPEHLLGALVEDGQTGAARLLT
AQGEDVNRLEGLTGAPQRGPGRDQAGERGEAATTLEEFGRDLTAEARAGRLDPVVGRAEEIEQTVEILSRRSKNNPVLIG
EPGVGKTAIVEGLAQRVVAGEVPDTLKDRRVIALDLSAMVAGAQYRGQFEERLKKVIEEVRRARGEIMLFIDELHTVVGA
GATGEGAMDAGNMLKPALARGELRVVGATTIDEYRRYVEKDAALERRFQPVMVPEPSVEETVQILEGLRDAYEAHHQVRF
ADGALAAAAELSDRYVSDRFLPDKAIDVMDQAGARVRLRSAGRSTEVVGREDRIARLRREQEAAVAAEDYGEAARLKQEI
AEVEGELAGIEERREGVVSVTAADIADVISRRTGIPVSQLTASEKERLLRLEEEMHSRIVGQDEAVSAVSRAVRRSRAGM
GDPDRPVGSFLFLGPTGVGKTELAKTLAELLFGDEDRMVRFDMSEFQEKHTVARLVGAPPGYVGYEEAGQLTEKVRRQPY
SVVLFDEIEKAHPDVFNTLLQILDDGRLTDGQGRTVDFRHCVVVMTSNIGAHRILDRHGDVSDLGDTLMRELRDRFPPEF
LNRIDDIIVFHGLTEADLGRIVDHLLAHSERRVHAQGLTLEVTDAARRLLAAHGHQPEFGARPLRRTIQTELDNRVADLL
LAGEADPGDTIVADVLDDSLHCTVRKGTAPDEDASAA
Nucleotide
Download Length: 2514 bp
>NTDB_id=847101 VM636_RS06310 WP_030421431.1 1497125..1499638(-) (clpC) [Streptomyces sp. SCSIO 75703]
ATGTCGCTGTCCTCCATGGGCTTCGGTCCGTCCGACCCGTTCGGTGAGTTGCTGGGCCGGTTCTTCGGCATGTCACCGGG
GTCCTCGCCGCCGGCGGTGCAGCGGGTGCCGGTGGGGCGGCTGCTGTCGCAGTCCTCGCGGGAACTGCTGCGGCTGGCGG
CCGAGCGGGCGGCCGGGGACGGGGCCACCGACCTGGACACGGAGCACCTGCTCTGGGCGGCGACCCGGGTGGAGCCCTCC
CGGGGGCTGCTGGCGCAGGCCGGGGTGGACCCGGACGGGCTGGCCACGCGGGTGGCCGAGGTGCTGCCCCGGGAGTCGGC
CGAACCGTCGGCCGAGCCGGGGCTGACCCCGGCGGCGAAGCGGACCCTGGCGGAGGCGTACGCGCGCTCGCAGGCCGCGG
GGGCCTCGTACATCGGGCCGGAACACCTGCTGGGCGCCCTGGTGGAGGACGGGCAGACCGGGGCGGCGCGGCTGCTCACG
GCACAGGGCGAGGACGTGAACCGGCTGGAAGGGCTGACCGGCGCGCCCCAGCGGGGGCCCGGCCGCGACCAGGCCGGCGA
ACGCGGCGAGGCGGCGACGACGCTGGAGGAGTTCGGCCGGGACCTGACGGCCGAGGCGCGGGCCGGCCGGCTCGACCCGG
TGGTCGGCCGGGCGGAGGAGATCGAGCAGACGGTCGAGATCCTGTCCCGGCGCTCCAAGAACAACCCGGTCCTGATCGGC
GAACCCGGCGTCGGCAAGACGGCGATCGTGGAGGGTCTGGCGCAGCGCGTCGTCGCCGGCGAGGTCCCGGACACCCTGAA
GGACCGCCGGGTGATCGCGCTGGACCTGTCCGCGATGGTGGCAGGCGCCCAGTACCGGGGCCAGTTCGAGGAGCGGCTGA
AGAAGGTCATCGAGGAGGTCCGGCGGGCCCGCGGCGAGATCATGCTCTTCATCGACGAACTGCACACCGTCGTCGGCGCC
GGGGCCACCGGCGAGGGCGCGATGGACGCGGGCAACATGCTCAAACCGGCCCTCGCCCGGGGCGAGTTGCGCGTCGTCGG
CGCGACCACCATCGACGAGTACCGCAGGTACGTCGAGAAGGACGCGGCCCTGGAACGCCGCTTCCAGCCGGTGATGGTGC
CGGAGCCGTCGGTCGAGGAGACGGTGCAGATCCTGGAGGGGCTGCGGGACGCCTACGAGGCCCACCACCAGGTGCGGTTC
GCCGACGGGGCGCTGGCCGCGGCGGCGGAGCTGTCCGACCGGTACGTCAGCGACCGCTTCCTGCCCGACAAGGCCATCGA
CGTGATGGACCAGGCGGGCGCGCGGGTGCGCCTGCGCAGCGCCGGCCGGTCCACCGAGGTCGTCGGCCGCGAGGACCGGA
TCGCCCGGCTGCGGCGGGAGCAGGAGGCCGCGGTGGCCGCCGAGGACTACGGCGAGGCGGCCCGGCTGAAGCAGGAGATC
GCCGAGGTGGAGGGCGAACTGGCCGGCATCGAGGAGCGCCGCGAGGGCGTCGTGTCGGTGACCGCGGCCGACATCGCCGA
CGTGATCTCACGGCGGACGGGCATCCCCGTCTCCCAGTTGACCGCCAGTGAGAAGGAGCGGCTGCTGCGGCTGGAGGAGG
AGATGCACTCCCGGATCGTGGGCCAGGACGAGGCCGTGTCCGCGGTGTCGCGGGCCGTGCGCCGCAGCCGCGCCGGGATG
GGCGACCCGGACCGCCCGGTGGGCTCGTTCCTCTTCCTCGGCCCCACCGGGGTCGGCAAGACCGAGCTGGCCAAGACCCT
CGCCGAGCTGCTGTTCGGGGACGAGGACCGCATGGTCCGCTTCGACATGAGCGAGTTCCAGGAGAAGCACACGGTGGCCC
GCCTGGTCGGGGCGCCACCCGGGTACGTCGGGTACGAGGAGGCCGGGCAGCTCACCGAGAAGGTGCGCCGGCAGCCGTAC
AGCGTGGTCCTCTTCGACGAGATCGAGAAGGCCCACCCGGACGTCTTCAACACGCTGCTGCAGATCCTCGACGACGGCCG
CCTGACCGACGGACAGGGCCGCACCGTCGACTTCCGGCACTGCGTGGTCGTCATGACGTCGAACATCGGCGCGCACCGCA
TCCTCGACCGGCACGGCGACGTCTCCGACCTCGGGGACACGCTGATGCGGGAGTTGCGGGACCGGTTCCCGCCGGAGTTT
CTCAACCGCATCGACGACATCATCGTCTTCCACGGGCTGACCGAGGCCGACCTCGGCCGGATCGTCGACCACCTCCTCGC
CCACAGCGAGCGCCGCGTCCACGCCCAGGGCCTCACCCTGGAGGTCACCGACGCCGCGCGCCGGCTGCTGGCCGCCCACG
GCCATCAGCCGGAGTTCGGTGCCCGCCCGCTGCGCCGGACCATCCAGACCGAGCTGGACAACCGCGTCGCCGACCTCCTC
CTGGCCGGCGAGGCCGACCCCGGCGACACCATCGTCGCCGACGTCCTCGACGACTCCCTCCACTGCACCGTCAGGAAGGG
CACGGCACCGGACGAGGACGCCTCCGCGGCGTAG
ATGTCGCTGTCCTCCATGGGCTTCGGTCCGTCCGACCCGTTCGGTGAGTTGCTGGGCCGGTTCTTCGGCATGTCACCGGG
GTCCTCGCCGCCGGCGGTGCAGCGGGTGCCGGTGGGGCGGCTGCTGTCGCAGTCCTCGCGGGAACTGCTGCGGCTGGCGG
CCGAGCGGGCGGCCGGGGACGGGGCCACCGACCTGGACACGGAGCACCTGCTCTGGGCGGCGACCCGGGTGGAGCCCTCC
CGGGGGCTGCTGGCGCAGGCCGGGGTGGACCCGGACGGGCTGGCCACGCGGGTGGCCGAGGTGCTGCCCCGGGAGTCGGC
CGAACCGTCGGCCGAGCCGGGGCTGACCCCGGCGGCGAAGCGGACCCTGGCGGAGGCGTACGCGCGCTCGCAGGCCGCGG
GGGCCTCGTACATCGGGCCGGAACACCTGCTGGGCGCCCTGGTGGAGGACGGGCAGACCGGGGCGGCGCGGCTGCTCACG
GCACAGGGCGAGGACGTGAACCGGCTGGAAGGGCTGACCGGCGCGCCCCAGCGGGGGCCCGGCCGCGACCAGGCCGGCGA
ACGCGGCGAGGCGGCGACGACGCTGGAGGAGTTCGGCCGGGACCTGACGGCCGAGGCGCGGGCCGGCCGGCTCGACCCGG
TGGTCGGCCGGGCGGAGGAGATCGAGCAGACGGTCGAGATCCTGTCCCGGCGCTCCAAGAACAACCCGGTCCTGATCGGC
GAACCCGGCGTCGGCAAGACGGCGATCGTGGAGGGTCTGGCGCAGCGCGTCGTCGCCGGCGAGGTCCCGGACACCCTGAA
GGACCGCCGGGTGATCGCGCTGGACCTGTCCGCGATGGTGGCAGGCGCCCAGTACCGGGGCCAGTTCGAGGAGCGGCTGA
AGAAGGTCATCGAGGAGGTCCGGCGGGCCCGCGGCGAGATCATGCTCTTCATCGACGAACTGCACACCGTCGTCGGCGCC
GGGGCCACCGGCGAGGGCGCGATGGACGCGGGCAACATGCTCAAACCGGCCCTCGCCCGGGGCGAGTTGCGCGTCGTCGG
CGCGACCACCATCGACGAGTACCGCAGGTACGTCGAGAAGGACGCGGCCCTGGAACGCCGCTTCCAGCCGGTGATGGTGC
CGGAGCCGTCGGTCGAGGAGACGGTGCAGATCCTGGAGGGGCTGCGGGACGCCTACGAGGCCCACCACCAGGTGCGGTTC
GCCGACGGGGCGCTGGCCGCGGCGGCGGAGCTGTCCGACCGGTACGTCAGCGACCGCTTCCTGCCCGACAAGGCCATCGA
CGTGATGGACCAGGCGGGCGCGCGGGTGCGCCTGCGCAGCGCCGGCCGGTCCACCGAGGTCGTCGGCCGCGAGGACCGGA
TCGCCCGGCTGCGGCGGGAGCAGGAGGCCGCGGTGGCCGCCGAGGACTACGGCGAGGCGGCCCGGCTGAAGCAGGAGATC
GCCGAGGTGGAGGGCGAACTGGCCGGCATCGAGGAGCGCCGCGAGGGCGTCGTGTCGGTGACCGCGGCCGACATCGCCGA
CGTGATCTCACGGCGGACGGGCATCCCCGTCTCCCAGTTGACCGCCAGTGAGAAGGAGCGGCTGCTGCGGCTGGAGGAGG
AGATGCACTCCCGGATCGTGGGCCAGGACGAGGCCGTGTCCGCGGTGTCGCGGGCCGTGCGCCGCAGCCGCGCCGGGATG
GGCGACCCGGACCGCCCGGTGGGCTCGTTCCTCTTCCTCGGCCCCACCGGGGTCGGCAAGACCGAGCTGGCCAAGACCCT
CGCCGAGCTGCTGTTCGGGGACGAGGACCGCATGGTCCGCTTCGACATGAGCGAGTTCCAGGAGAAGCACACGGTGGCCC
GCCTGGTCGGGGCGCCACCCGGGTACGTCGGGTACGAGGAGGCCGGGCAGCTCACCGAGAAGGTGCGCCGGCAGCCGTAC
AGCGTGGTCCTCTTCGACGAGATCGAGAAGGCCCACCCGGACGTCTTCAACACGCTGCTGCAGATCCTCGACGACGGCCG
CCTGACCGACGGACAGGGCCGCACCGTCGACTTCCGGCACTGCGTGGTCGTCATGACGTCGAACATCGGCGCGCACCGCA
TCCTCGACCGGCACGGCGACGTCTCCGACCTCGGGGACACGCTGATGCGGGAGTTGCGGGACCGGTTCCCGCCGGAGTTT
CTCAACCGCATCGACGACATCATCGTCTTCCACGGGCTGACCGAGGCCGACCTCGGCCGGATCGTCGACCACCTCCTCGC
CCACAGCGAGCGCCGCGTCCACGCCCAGGGCCTCACCCTGGAGGTCACCGACGCCGCGCGCCGGCTGCTGGCCGCCCACG
GCCATCAGCCGGAGTTCGGTGCCCGCCCGCTGCGCCGGACCATCCAGACCGAGCTGGACAACCGCGTCGCCGACCTCCTC
CTGGCCGGCGAGGCCGACCCCGGCGACACCATCGTCGCCGACGTCCTCGACGACTCCCTCCACTGCACCGTCAGGAAGGG
CACGGCACCGGACGAGGACGCCTCCGCGGCGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
50.5 |
95.579 |
0.483 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
44.906 |
94.982 |
0.427 |
| clpC | Streptococcus mutans UA159 |
43.015 |
97.491 |
0.419 |
| clpC | Lactococcus lactis subsp. cremoris KW2 |
50.299 |
80.048 |
0.403 |
| clpC | Streptococcus thermophilus LMD-9 |
44.267 |
89.606 |
0.397 |
| clpC | Streptococcus thermophilus LMG 18311 |
43.867 |
89.606 |
0.393 |
| clpE | Streptococcus mutans UA159 |
52.117 |
73.357 |
0.382 |
| clpE | Streptococcus pneumoniae R6 |
51.545 |
73.477 |
0.379 |
| clpE | Streptococcus pneumoniae Rx1 |
51.545 |
73.477 |
0.379 |
| clpE | Streptococcus pneumoniae D39 |
51.545 |
73.477 |
0.379 |
| clpC | Streptococcus pneumoniae Rx1 |
43.544 |
86.977 |
0.379 |
| clpC | Streptococcus pneumoniae D39 |
43.544 |
86.977 |
0.379 |
| clpE | Streptococcus pneumoniae TIGR4 |
51.466 |
73.357 |
0.378 |
| clpC | Streptococcus pneumoniae TIGR4 |
46.119 |
78.495 |
0.362 |