Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | VM636_RS04045 | Genome accession | NZ_CP144555 |
| Coordinates | 887008..889536 (+) | Length | 842 a.a. |
| NCBI ID | WP_053914242.1 | Uniprot ID | - |
| Organism | Streptomyces sp. SCSIO 75703 | ||
| Function | degradation of ComK; degradation of DegU (predicted from homology) Competence regulation |
||
Genomic Context
Location: 882008..894536
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VM636_RS04025 (VM636_04025) | - | 883306..884589 (-) | 1284 | WP_030418724.1 | aspartate aminotransferase family protein | - |
| VM636_RS04030 (VM636_04030) | - | 884586..885428 (-) | 843 | WP_053914239.1 | nitrilase-related carbon-nitrogen hydrolase | - |
| VM636_RS04035 (VM636_04035) | - | 885770..886036 (-) | 267 | WP_053914240.1 | helix-turn-helix transcriptional regulator | - |
| VM636_RS04040 (VM636_04040) | map | 886099..886875 (+) | 777 | WP_338483314.1 | type I methionyl aminopeptidase | - |
| VM636_RS04045 (VM636_04045) | clpC | 887008..889536 (+) | 2529 | WP_053914242.1 | ATP-dependent Clp protease ATP-binding subunit | Regulator |
| VM636_RS04050 (VM636_04050) | ggt | 889543..891345 (-) | 1803 | WP_030418719.1 | gamma-glutamyltransferase | - |
| VM636_RS04055 (VM636_04055) | - | 892303..892731 (+) | 429 | WP_051821205.1 | hypothetical protein | - |
| VM636_RS04060 (VM636_04060) | - | 892820..893710 (-) | 891 | WP_030418717.1 | Lrp/AsnC family transcriptional regulator | - |
Sequence
Protein
Download Length: 842 a.a. Molecular weight: 91824.90 Da Isoelectric Point: 5.0541
>NTDB_id=847100 VM636_RS04045 WP_053914242.1 887008..889536(+) (clpC) [Streptomyces sp. SCSIO 75703]
MTSGFMGPEGDPFAEFLARFFGGPRPRQIDIGRLLSQPARELVRGAAQYAAEHGSRDLDTEHLLRAALSAEPTRSLLSRA
GADPDSLATQIDERTGPAQHAPGDAPPPTSLSLTPAVKRALLDAHELARASGTGHIGPEHVLSALAANPDSAAGHILNAA
RFAPGALPQETPDAARARAEGARATNTPTLDKYGRDLTDLARQGRIDPVIGRDDEIEQTVEVLSRRGKNNPVLIGDAGVG
KTAVVEGLAQRIADGDVPDVLTGRRVVALDLTGVVAGTRYRGDFEERLNTIVGEISAHSDRLVVFIDELHTVVGAGGGGE
SGSMDAGNILKPALARGELHIVGATTLEEYRRIEKDAALARRFQPILVPEPTPEDAVEILRGLRDRYEAHHQVRYTDEAL
VAAVALSDRYLTDRRLPDKAIDLIDQAGARVRLRARTRGSDVRAMEREAEQLARDKDQAVADERYEEATRLRDRVTELRR
RISEETGDAEADEGLNLVVGTEAVAEVVSRLTGIPVSSLTQEEKDRLLGLEEHLHERVVGQDEAVRVVSDAVLRSRAGLS
GPDRPIGSFLFLGPTGVGKTELARALAEALFGSEDRMVRLDMSEYQERHTVSRLVGAPPGYVGHEEAGQLTEVVRRHPYS
LLLLDEVEKAHPDVFNILLQVLDDGRLTDSQGRTVDFSNTVVVMTSNLGSDVIGRRGAGIGFGAGGSDADEEARREQVLR
PLREHFRPEFLNRIDEIVVFRRLSGEQLRQITGLLLERTRRMVRAQDITVDFTDGAVDWLAERGYQPEYGARPLRRTIQR
EVDNQLSRLLLDGRITEGGRVTVEVEDGRLAFRTEDPSVPAS
MTSGFMGPEGDPFAEFLARFFGGPRPRQIDIGRLLSQPARELVRGAAQYAAEHGSRDLDTEHLLRAALSAEPTRSLLSRA
GADPDSLATQIDERTGPAQHAPGDAPPPTSLSLTPAVKRALLDAHELARASGTGHIGPEHVLSALAANPDSAAGHILNAA
RFAPGALPQETPDAARARAEGARATNTPTLDKYGRDLTDLARQGRIDPVIGRDDEIEQTVEVLSRRGKNNPVLIGDAGVG
KTAVVEGLAQRIADGDVPDVLTGRRVVALDLTGVVAGTRYRGDFEERLNTIVGEISAHSDRLVVFIDELHTVVGAGGGGE
SGSMDAGNILKPALARGELHIVGATTLEEYRRIEKDAALARRFQPILVPEPTPEDAVEILRGLRDRYEAHHQVRYTDEAL
VAAVALSDRYLTDRRLPDKAIDLIDQAGARVRLRARTRGSDVRAMEREAEQLARDKDQAVADERYEEATRLRDRVTELRR
RISEETGDAEADEGLNLVVGTEAVAEVVSRLTGIPVSSLTQEEKDRLLGLEEHLHERVVGQDEAVRVVSDAVLRSRAGLS
GPDRPIGSFLFLGPTGVGKTELARALAEALFGSEDRMVRLDMSEYQERHTVSRLVGAPPGYVGHEEAGQLTEVVRRHPYS
LLLLDEVEKAHPDVFNILLQVLDDGRLTDSQGRTVDFSNTVVVMTSNLGSDVIGRRGAGIGFGAGGSDADEEARREQVLR
PLREHFRPEFLNRIDEIVVFRRLSGEQLRQITGLLLERTRRMVRAQDITVDFTDGAVDWLAERGYQPEYGARPLRRTIQR
EVDNQLSRLLLDGRITEGGRVTVEVEDGRLAFRTEDPSVPAS
Nucleotide
Download Length: 2529 bp
>NTDB_id=847100 VM636_RS04045 WP_053914242.1 887008..889536(+) (clpC) [Streptomyces sp. SCSIO 75703]
ATGACCAGCGGCTTCATGGGCCCGGAGGGCGACCCGTTCGCGGAATTCCTGGCACGCTTCTTCGGCGGGCCGCGCCCCCG
GCAGATCGACATCGGCCGGCTGCTCAGCCAGCCCGCCCGGGAACTGGTGCGCGGCGCCGCCCAGTACGCGGCCGAGCACG
GCAGCCGGGACCTGGACACCGAGCACCTGCTGCGGGCCGCGCTCTCCGCCGAGCCCACCCGCAGCCTGCTCAGCCGGGCC
GGCGCCGACCCCGACTCGCTGGCGACGCAGATCGACGAGCGGACCGGCCCGGCGCAGCACGCGCCCGGCGATGCCCCGCC
GCCGACCTCGCTGTCGCTGACCCCCGCGGTCAAGCGGGCCCTGCTGGACGCGCACGAGCTGGCCCGCGCGTCCGGCACCG
GGCACATCGGCCCCGAGCACGTGCTCAGCGCGCTGGCCGCCAACCCGGACTCGGCCGCCGGGCACATCCTGAACGCGGCC
CGGTTCGCGCCCGGTGCCCTGCCCCAGGAGACGCCGGACGCGGCGCGGGCCCGCGCCGAGGGGGCCCGCGCCACGAACAC
GCCGACCCTGGACAAGTACGGGCGCGATCTGACCGACCTCGCCCGGCAGGGCCGGATCGACCCGGTGATCGGACGGGACG
ACGAGATCGAGCAGACCGTGGAGGTGCTGTCCCGGCGCGGCAAGAACAACCCCGTGCTGATCGGCGACGCCGGGGTCGGC
AAGACCGCCGTCGTCGAGGGGCTGGCTCAGCGCATCGCCGACGGCGACGTGCCCGACGTGCTGACCGGGCGCCGGGTCGT
CGCGCTGGACCTGACCGGCGTGGTCGCCGGCACCCGCTACCGGGGCGACTTCGAGGAACGGCTGAACACCATCGTCGGCG
AGATCAGCGCCCACTCCGACCGGCTCGTCGTCTTCATCGACGAACTGCACACCGTGGTCGGCGCCGGCGGGGGCGGCGAG
AGCGGGTCGATGGACGCGGGCAACATCCTCAAGCCGGCCCTCGCCCGGGGCGAACTGCACATCGTGGGCGCCACGACCCT
GGAGGAGTACCGCAGGATCGAGAAGGACGCCGCCCTCGCCCGCCGCTTCCAGCCCATCCTGGTGCCGGAGCCGACCCCCG
AGGACGCCGTCGAGATCCTGCGCGGGCTGCGCGACCGCTACGAGGCCCACCACCAGGTCCGCTACACCGACGAGGCCCTG
GTGGCGGCCGTCGCGCTGTCCGACCGTTACCTCACCGACCGGCGCCTGCCCGACAAGGCCATCGACCTCATCGACCAGGC
CGGCGCCCGGGTGCGGCTGCGCGCCCGAACCCGGGGCAGCGACGTACGGGCCATGGAACGCGAGGCCGAGCAGCTCGCCC
GGGACAAGGACCAGGCGGTCGCGGACGAGCGGTACGAGGAGGCCACGCGGCTGCGCGACCGGGTCACCGAACTGCGCCGG
CGGATCTCGGAGGAGACCGGCGACGCGGAGGCCGACGAGGGCCTGAACCTGGTGGTCGGCACGGAGGCCGTCGCCGAGGT
GGTGTCCCGGCTGACCGGCATCCCGGTCAGCAGCCTCACCCAGGAGGAGAAGGACCGCCTGCTCGGCCTGGAGGAGCACC
TGCACGAACGGGTCGTCGGCCAGGACGAGGCGGTCCGGGTCGTCTCCGACGCGGTGCTGCGCTCGCGCGCCGGCCTCTCC
GGACCGGACCGGCCCATCGGCAGCTTCCTCTTCCTCGGGCCCACCGGCGTCGGCAAGACCGAACTGGCCCGCGCGCTGGC
CGAGGCCCTGTTCGGCAGCGAGGACCGCATGGTCCGCCTGGACATGAGCGAGTACCAGGAGCGGCACACCGTCAGCCGCC
TCGTCGGCGCCCCGCCCGGCTACGTCGGGCACGAGGAGGCCGGCCAGCTCACCGAGGTGGTGCGCCGGCACCCGTACTCG
CTGCTCCTGCTGGACGAGGTGGAGAAGGCGCACCCGGACGTCTTCAACATCCTGCTCCAGGTGCTCGACGACGGGCGTCT
GACCGACTCCCAGGGCCGCACCGTCGACTTCTCCAACACGGTCGTCGTGATGACCAGCAACCTCGGCTCGGACGTCATCG
GCCGGCGCGGGGCCGGGATCGGCTTCGGCGCGGGCGGCTCGGACGCCGACGAGGAGGCCCGGCGCGAGCAGGTGCTGCGT
CCGCTGCGGGAGCACTTCCGGCCCGAGTTCCTCAACCGCATCGACGAGATCGTCGTCTTCCGGCGGCTCAGTGGGGAGCA
ACTGCGGCAGATCACCGGCCTGCTGCTGGAGCGGACCCGGCGCATGGTCCGCGCCCAGGACATCACCGTCGACTTCACCG
ACGGGGCCGTCGACTGGCTCGCCGAGCGCGGCTACCAGCCCGAGTACGGGGCCCGGCCGCTGCGCCGCACCATCCAGCGC
GAGGTCGACAACCAGCTCTCCCGGCTGCTGCTGGACGGGCGGATCACCGAGGGCGGCCGGGTCACGGTCGAGGTCGAGGA
CGGCCGGCTGGCGTTCCGCACCGAGGACCCGTCCGTCCCCGCCTCCTGA
ATGACCAGCGGCTTCATGGGCCCGGAGGGCGACCCGTTCGCGGAATTCCTGGCACGCTTCTTCGGCGGGCCGCGCCCCCG
GCAGATCGACATCGGCCGGCTGCTCAGCCAGCCCGCCCGGGAACTGGTGCGCGGCGCCGCCCAGTACGCGGCCGAGCACG
GCAGCCGGGACCTGGACACCGAGCACCTGCTGCGGGCCGCGCTCTCCGCCGAGCCCACCCGCAGCCTGCTCAGCCGGGCC
GGCGCCGACCCCGACTCGCTGGCGACGCAGATCGACGAGCGGACCGGCCCGGCGCAGCACGCGCCCGGCGATGCCCCGCC
GCCGACCTCGCTGTCGCTGACCCCCGCGGTCAAGCGGGCCCTGCTGGACGCGCACGAGCTGGCCCGCGCGTCCGGCACCG
GGCACATCGGCCCCGAGCACGTGCTCAGCGCGCTGGCCGCCAACCCGGACTCGGCCGCCGGGCACATCCTGAACGCGGCC
CGGTTCGCGCCCGGTGCCCTGCCCCAGGAGACGCCGGACGCGGCGCGGGCCCGCGCCGAGGGGGCCCGCGCCACGAACAC
GCCGACCCTGGACAAGTACGGGCGCGATCTGACCGACCTCGCCCGGCAGGGCCGGATCGACCCGGTGATCGGACGGGACG
ACGAGATCGAGCAGACCGTGGAGGTGCTGTCCCGGCGCGGCAAGAACAACCCCGTGCTGATCGGCGACGCCGGGGTCGGC
AAGACCGCCGTCGTCGAGGGGCTGGCTCAGCGCATCGCCGACGGCGACGTGCCCGACGTGCTGACCGGGCGCCGGGTCGT
CGCGCTGGACCTGACCGGCGTGGTCGCCGGCACCCGCTACCGGGGCGACTTCGAGGAACGGCTGAACACCATCGTCGGCG
AGATCAGCGCCCACTCCGACCGGCTCGTCGTCTTCATCGACGAACTGCACACCGTGGTCGGCGCCGGCGGGGGCGGCGAG
AGCGGGTCGATGGACGCGGGCAACATCCTCAAGCCGGCCCTCGCCCGGGGCGAACTGCACATCGTGGGCGCCACGACCCT
GGAGGAGTACCGCAGGATCGAGAAGGACGCCGCCCTCGCCCGCCGCTTCCAGCCCATCCTGGTGCCGGAGCCGACCCCCG
AGGACGCCGTCGAGATCCTGCGCGGGCTGCGCGACCGCTACGAGGCCCACCACCAGGTCCGCTACACCGACGAGGCCCTG
GTGGCGGCCGTCGCGCTGTCCGACCGTTACCTCACCGACCGGCGCCTGCCCGACAAGGCCATCGACCTCATCGACCAGGC
CGGCGCCCGGGTGCGGCTGCGCGCCCGAACCCGGGGCAGCGACGTACGGGCCATGGAACGCGAGGCCGAGCAGCTCGCCC
GGGACAAGGACCAGGCGGTCGCGGACGAGCGGTACGAGGAGGCCACGCGGCTGCGCGACCGGGTCACCGAACTGCGCCGG
CGGATCTCGGAGGAGACCGGCGACGCGGAGGCCGACGAGGGCCTGAACCTGGTGGTCGGCACGGAGGCCGTCGCCGAGGT
GGTGTCCCGGCTGACCGGCATCCCGGTCAGCAGCCTCACCCAGGAGGAGAAGGACCGCCTGCTCGGCCTGGAGGAGCACC
TGCACGAACGGGTCGTCGGCCAGGACGAGGCGGTCCGGGTCGTCTCCGACGCGGTGCTGCGCTCGCGCGCCGGCCTCTCC
GGACCGGACCGGCCCATCGGCAGCTTCCTCTTCCTCGGGCCCACCGGCGTCGGCAAGACCGAACTGGCCCGCGCGCTGGC
CGAGGCCCTGTTCGGCAGCGAGGACCGCATGGTCCGCCTGGACATGAGCGAGTACCAGGAGCGGCACACCGTCAGCCGCC
TCGTCGGCGCCCCGCCCGGCTACGTCGGGCACGAGGAGGCCGGCCAGCTCACCGAGGTGGTGCGCCGGCACCCGTACTCG
CTGCTCCTGCTGGACGAGGTGGAGAAGGCGCACCCGGACGTCTTCAACATCCTGCTCCAGGTGCTCGACGACGGGCGTCT
GACCGACTCCCAGGGCCGCACCGTCGACTTCTCCAACACGGTCGTCGTGATGACCAGCAACCTCGGCTCGGACGTCATCG
GCCGGCGCGGGGCCGGGATCGGCTTCGGCGCGGGCGGCTCGGACGCCGACGAGGAGGCCCGGCGCGAGCAGGTGCTGCGT
CCGCTGCGGGAGCACTTCCGGCCCGAGTTCCTCAACCGCATCGACGAGATCGTCGTCTTCCGGCGGCTCAGTGGGGAGCA
ACTGCGGCAGATCACCGGCCTGCTGCTGGAGCGGACCCGGCGCATGGTCCGCGCCCAGGACATCACCGTCGACTTCACCG
ACGGGGCCGTCGACTGGCTCGCCGAGCGCGGCTACCAGCCCGAGTACGGGGCCCGGCCGCTGCGCCGCACCATCCAGCGC
GAGGTCGACAACCAGCTCTCCCGGCTGCTGCTGGACGGGCGGATCACCGAGGGCGGCCGGGTCACGGTCGAGGTCGAGGA
CGGCCGGCTGGCGTTCCGCACCGAGGACCCGTCCGTCCCCGCCTCCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
47.666 |
96.675 |
0.461 |
| clpC | Streptococcus pneumoniae TIGR4 |
44.005 |
99.05 |
0.436 |
| clpC | Streptococcus pneumoniae D39 |
43.765 |
99.05 |
0.433 |
| clpC | Streptococcus pneumoniae Rx1 |
43.765 |
99.05 |
0.433 |
| clpC | Streptococcus mutans UA159 |
43.593 |
99.169 |
0.432 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
44.994 |
96.081 |
0.432 |
| clpE | Streptococcus mutans UA159 |
48.75 |
85.511 |
0.417 |
| clpC | Streptococcus thermophilus LMD-9 |
46.215 |
89.43 |
0.413 |
| clpC | Streptococcus thermophilus LMG 18311 |
45.418 |
89.43 |
0.406 |
| clpC | Lactococcus lactis subsp. cremoris KW2 |
49.256 |
79.81 |
0.393 |
| clpE | Streptococcus pneumoniae Rx1 |
51.037 |
74.466 |
0.38 |
| clpE | Streptococcus pneumoniae D39 |
51.037 |
74.466 |
0.38 |
| clpE | Streptococcus pneumoniae R6 |
51.037 |
74.466 |
0.38 |
| clpE | Streptococcus pneumoniae TIGR4 |
51.037 |
74.466 |
0.38 |