Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   VM636_RS01810 Genome accession   NZ_CP144555
Coordinates   386936..389014 (+) Length   692 a.a.
NCBI ID   WP_338483005.1    Uniprot ID   -
Organism   Streptomyces sp. SCSIO 75703     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 381936..394014
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VM636_RS01785 (VM636_01785) egtD 382339..383301 (+) 963 WP_030418869.1 L-histidine N(alpha)-methyltransferase -
  VM636_RS01790 (VM636_01790) - 383350..384585 (-) 1236 WP_030418868.1 extracellular solute-binding protein -
  VM636_RS01795 (VM636_01795) - 384913..385131 (+) 219 WP_030418867.1 dodecin -
  VM636_RS01800 (VM636_01800) - 385216..385707 (-) 492 WP_030418866.1 nucleotidase -
  VM636_RS01805 (VM636_01805) - 385775..386824 (+) 1050 WP_051821211.1 LLM class flavin-dependent oxidoreductase -
  VM636_RS01810 (VM636_01810) uvrA 386936..389014 (+) 2079 WP_338483005.1 excinuclease ABC subunit UvrA Machinery gene
  VM636_RS01815 (VM636_01815) - 389108..390061 (+) 954 Protein_362 IS481 family transposase -
  VM636_RS01820 (VM636_01820) - 390059..390346 (+) 288 Protein_363 ABC transporter -
  VM636_RS01825 (VM636_01825) - 390392..391321 (-) 930 WP_338483006.1 PRC and DUF2382 domain-containing protein -
  VM636_RS01830 (VM636_01830) - 391328..392227 (-) 900 WP_338483008.1 lysophospholipid acyltransferase family protein -
  VM636_RS01835 (VM636_01835) - 392227..392997 (-) 771 WP_338483009.1 GNAT family N-acyltransferase -

Sequence

Protein


Download         Length: 692 a.a.        Molecular weight: 74025.14 Da        Isoelectric Point: 9.6274

>NTDB_id=847097 VM636_RS01810 WP_338483005.1 386936..389014(+) (uvrA) [Streptomyces sp. SCSIO 75703]
MHSPHDPYVRVRGAREHNLRGVDVDVPRDVVAVFTGVSGSGKSSLAFGTVYAEAQRRYFESVAPYARRLIHQVGAPKVGE
ITGLPPAVSLQQRRAAPTSRSSVGTVTTLSNSLRMLFSRAGTYPPGAPRLDSDAFSPHTAAGACPECEGLGRVHRVTEES
LVPDPSLSIREGAVAAWPGAWQGKNLRDVLDALGHDVDRPWRELPAREREWILFTDEQPVVTVHPVREAGRVQRPYQGTY
TSARRYVLKTFAQSRSPALRARAERHLTSEPCPVCGGARLRREALAVTVGGRTVTELAALPLADLAGVLPTEGETARVLT
ADLVSRVRPVVELGLGYLSLDRPAPTLSAGELQRLRLATQLRSGLFGVVYVLDEPSAGLHPADTEALLTILGRLKAAGNS
VFVVEHHLGVVREADWIVDVGPGAGEHGGRVLYSGPVDGLAGTACSATARYLFDRSPAPARPVREARGTLTVGPVTRHNL
RGVRAEVPLGVLTAVTGVSGSGKSTLLDAITEDLPGVRRLVRVDQKPIGRTPRSNLATYTGLFDVVRRLFAATDAARARG
YGAGRFSFNTASGGRCETCQGEGFVSVELLFLPSTYAPCPDCGGARYGPATLEVTYRGRNIAQVLDLTVEEAGAFFADRP
AVARSLSALLAVGLGYLRLGQPATELSGGEAQRVKLASELQRSRRGHTLYLY

Nucleotide


Download         Length: 2079 bp        

>NTDB_id=847097 VM636_RS01810 WP_338483005.1 386936..389014(+) (uvrA) [Streptomyces sp. SCSIO 75703]
ATGCACAGCCCCCACGACCCCTACGTCCGGGTGCGCGGCGCCCGTGAGCACAACCTGCGGGGTGTGGACGTCGACGTCCC
GCGCGACGTCGTGGCCGTCTTCACCGGGGTGTCGGGCTCCGGCAAGTCCTCCCTCGCCTTCGGCACCGTCTACGCGGAGG
CGCAGCGGCGCTACTTCGAGTCGGTCGCGCCCTACGCGCGCCGGCTGATCCACCAGGTGGGTGCGCCGAAGGTGGGCGAG
ATCACCGGGCTGCCGCCCGCCGTGTCGCTCCAGCAGCGCCGGGCGGCACCGACCTCCCGGTCCTCGGTGGGCACGGTCAC
CACCCTGTCCAACTCGCTGCGGATGCTGTTCTCGCGCGCCGGGACCTACCCGCCGGGGGCGCCGCGGCTGGACTCGGACG
CCTTCTCCCCGCACACGGCGGCCGGGGCGTGCCCGGAGTGCGAGGGGCTCGGCCGGGTGCACCGGGTCACCGAGGAGTCG
CTGGTCCCCGACCCGTCGCTGTCCATCCGCGAGGGCGCCGTCGCGGCCTGGCCGGGCGCCTGGCAGGGCAAGAACCTGCG
GGACGTCCTCGACGCGCTGGGCCACGACGTGGACCGGCCCTGGCGCGAGCTGCCGGCGCGGGAGCGGGAGTGGATCCTGT
TCACGGACGAGCAGCCGGTGGTGACGGTGCACCCGGTCCGGGAGGCGGGCCGCGTCCAGCGGCCGTACCAGGGGACGTAC
ACGAGCGCCCGCCGGTACGTCCTGAAGACCTTCGCGCAGTCCCGGAGCCCGGCGCTCAGGGCGCGGGCGGAGCGCCATCT
GACCAGCGAGCCCTGCCCGGTGTGCGGCGGGGCCCGGCTGCGGCGGGAGGCGCTGGCGGTGACCGTCGGCGGGCGGACGG
TCACCGAACTGGCCGCGCTGCCGCTCGCGGACCTCGCCGGCGTGCTGCCCACCGAGGGCGAGACGGCACGGGTGCTCACC
GCAGACCTCGTCTCCCGGGTGAGGCCCGTCGTCGAACTGGGCCTCGGCTACCTGAGCCTGGACCGGCCGGCGCCGACCCT
CTCGGCGGGCGAGCTGCAACGGCTGCGGCTCGCGACCCAGTTGCGCTCGGGACTGTTCGGCGTGGTCTACGTCCTCGACG
AGCCGTCCGCGGGACTGCACCCGGCGGACACGGAGGCGCTGCTGACGATCCTGGGGCGGCTGAAGGCGGCCGGGAACTCG
GTGTTCGTGGTCGAGCACCACCTCGGCGTGGTCCGCGAGGCCGACTGGATCGTCGACGTGGGCCCGGGGGCGGGCGAGCA
CGGCGGCCGGGTGCTGTACAGCGGGCCCGTGGACGGGCTGGCCGGCACGGCGTGCTCGGCGACGGCCCGGTACCTCTTCG
ACCGCTCCCCCGCGCCCGCACGGCCGGTGCGCGAGGCCCGGGGCACGCTGACGGTCGGCCCGGTGACCCGGCACAACCTG
CGCGGGGTGCGGGCCGAGGTGCCGCTCGGCGTGCTCACCGCCGTGACCGGTGTGTCCGGCTCCGGCAAGTCGACGCTCCT
GGACGCGATCACCGAGGACCTGCCCGGCGTGCGGCGGCTGGTGCGCGTCGACCAGAAGCCCATCGGGCGCACCCCGCGTT
CCAACCTGGCCACGTACACGGGGCTGTTCGACGTGGTGCGCCGGCTCTTCGCCGCCACGGACGCGGCCCGCGCACGCGGG
TACGGCGCCGGCCGGTTCTCCTTCAACACCGCCTCCGGCGGGCGCTGCGAGACCTGCCAGGGCGAGGGCTTCGTCAGCGT
CGAGCTGTTGTTCCTGCCGAGCACGTACGCGCCCTGCCCGGACTGCGGCGGGGCGCGTTACGGCCCGGCGACGCTGGAGG
TGACGTACCGGGGACGGAACATCGCCCAGGTGCTGGACCTGACGGTGGAGGAGGCGGGGGCCTTCTTCGCCGACCGGCCG
GCGGTGGCGCGCAGCCTGTCGGCGCTGCTGGCGGTCGGCCTCGGCTACCTGCGCCTGGGACAGCCCGCGACGGAGCTGTC
CGGCGGAGAGGCACAACGCGTCAAGCTGGCGAGCGAGTTGCAGCGGAGCCGGCGCGGGCACACGCTCTACCTGTATTGA

Domains

Predicted by InterProScan.

UvrA DNA-binding domain (UvrA_DNA-bind)

(159-264)

ABC transporter (ABC_tran)

(481-681)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

40.127

90.751

0.364
  uvrA Streptococcus pneumoniae TIGR4

40.127

90.751

0.364
  uvrA Streptococcus pneumoniae D39

40.127

90.751

0.364