Detailed information NTG0084709

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: QMG89_RS25005
• Genome accession: NZ_AP027191
• Coordinates: 4788245..4789270 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain 10153
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4783245..4794270

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QMG89_RS24995 (M10153_4797)	rpmE	4785476..4785688 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
QMG89_RS25000 (M10153_4798)	priA	4785891..4788089 (+)	2199	WP_001341957.1	primosomal protein N'	Machinery gene
QMG89_RS25005 (M10153_4799)	cytR	4788245..4789270 (+)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
QMG89_RS25010 (M10153_4800)	ftsN	4789362..4790321 (+)	960	WP_000068834.1	cell division protein FtsN	-
QMG89_RS25015 (M10153_4801)	hslV	4790414..4790944 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
QMG89_RS25020 (M10153_4802)	hslU	4790954..4792285 (+)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
QMG89_RS25025 (M10153_4803)	menA	4792352..4793278 (+)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
QMG89_RS25030 (M10153_4804)	rraA	4793371..4793856 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
QMG89_RS25035 (M10153_4805)	zapB	4793941..4794186 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=84709 QMG89_RS25005 WP_000644904.1 4788245..4789270(+) (cytR) [Escherichia coli strain 10153]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=84709 QMG89_RS25005 WP_000644904.1 4788245..4789270(+) (cytR) [Escherichia coli strain 10153]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGCTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTCGCACCGGAACTGGAG
CTACCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATCTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGTTACGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628