Detailed information NTG0847086

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: VZC43_RS21710
• Genome accession: NZ_CP144364
• Coordinates: 4487952..4488977 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain H106
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4482952..4493977

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VZC43_RS21690 (VZC43_21690)	metJ	4484013..4484330 (+)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-
VZC43_RS21695 (VZC43_21695)	yiiX	4484514..4485122 (+)	609	WP_000797353.1	YiiX family permuted papain-like enzyme	-
VZC43_RS21700 (VZC43_21700)	rpmE	4485183..4485395 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
VZC43_RS21705 (VZC43_21705)	priA	4485598..4487796 (+)	2199	WP_001333520.1	primosomal protein N'	Machinery gene
VZC43_RS21710 (VZC43_21710)	cytR	4487952..4488977 (+)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
VZC43_RS21715 (VZC43_21715)	ftsN	4489069..4490028 (+)	960	WP_000068828.1	cell division protein FtsN	-
VZC43_RS21720 (VZC43_21720)	hslV	4490121..4490651 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
VZC43_RS21725 (VZC43_21725)	hslU	4490661..4491992 (+)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
VZC43_RS21730 (VZC43_21730)	menA	4492059..4492985 (+)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
VZC43_RS21735 (VZC43_21735)	rraA	4493078..4493563 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
VZC43_RS21740 (VZC43_21740)	zapB	4493648..4493893 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=847086 VZC43_RS21710 WP_000644904.1 4487952..4488977(+) (cytR) [Escherichia coli strain H106]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=847086 VZC43_RS21710 WP_000644904.1 4487952..4488977(+) (cytR) [Escherichia coli strain H106]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAG
CTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628