Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   VZC43_RS14210 Genome accession   NZ_CP144364
Coordinates   2904751..2905380 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain H106     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2899751..2910380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VZC43_RS14195 (VZC43_14195) helD 2899993..2902047 (-) 2055 WP_001295354.1 DNA helicase IV -
  VZC43_RS14200 (VZC43_14200) yccF 2902170..2902616 (+) 447 WP_001261235.1 YccF domain-containing protein -
  VZC43_RS14205 (VZC43_14205) yccS 2902626..2904788 (+) 2163 WP_000875058.1 YccS family putative transporter -
  VZC43_RS14210 (VZC43_14210) sxy/tfoX 2904751..2905380 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  VZC43_RS14215 (VZC43_14215) sulA 2905599..2906108 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  VZC43_RS14220 (VZC43_14220) ompA 2906465..2907505 (+) 1041 WP_000750416.1 porin OmpA -
  VZC43_RS14225 (VZC43_14225) matP 2907581..2908033 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  VZC43_RS14230 (VZC43_14230) ycbZ 2908219..2909979 (+) 1761 WP_000152888.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=847063 VZC43_RS14210 WP_000839153.1 2904751..2905380(-) (sxy/tfoX) [Escherichia coli strain H106]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=847063 VZC43_RS14210 WP_000839153.1 2904751..2905380(-) (sxy/tfoX) [Escherichia coli strain H106]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1