Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   QSJ13_RS03030 Genome accession   NZ_CP128372
Coordinates   636329..637030 (+) Length   233 a.a.
NCBI ID   WP_000594588.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain XH2146     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 631329..642030
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSJ13_RS02995 (QSJ13_02995) kdsB 631852..632613 (+) 762 WP_000680697.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  QSJ13_RS03000 (QSJ13_03000) - 632625..633605 (+) 981 WP_001075419.1 DNA polymerase III subunit delta' -
  QSJ13_RS03005 (QSJ13_03005) - 633617..633958 (+) 342 WP_001183024.1 PilZ domain-containing protein -
  QSJ13_RS03010 (QSJ13_03010) - 633976..634749 (+) 774 WP_000497301.1 TatD family hydrolase -
  QSJ13_RS03015 (QSJ13_03015) - 634787..635395 (+) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  QSJ13_RS03020 (QSJ13_03020) - 635405..635959 (+) 555 WP_000841372.1 type II secretion system protein -
  QSJ13_RS03025 (QSJ13_03025) xcpV 635949..636329 (+) 381 WP_000836909.1 type II secretion system minor pseudopilin GspI Machinery gene
  QSJ13_RS03030 (QSJ13_03030) xcpW 636329..637030 (+) 702 WP_000594588.1 type II secretion system minor pseudopilin GspJ Machinery gene
  QSJ13_RS03035 (QSJ13_03035) gspK 637030..637989 (+) 960 WP_001218621.1 type II secretion system minor pseudopilin GspK -
  QSJ13_RS03040 (QSJ13_03040) - 638219..638815 (+) 597 WP_000908453.1 6-carboxytetrahydropterin synthase -
  QSJ13_RS03045 (QSJ13_03045) ung 638866..639579 (+) 714 WP_001177527.1 uracil-DNA glycosylase -
  QSJ13_RS03050 (QSJ13_03050) - 639576..640700 (+) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  QSJ13_RS03055 (QSJ13_03055) tadA 640707..641210 (+) 504 WP_000033177.1 tRNA adenosine(34) deaminase TadA -
  QSJ13_RS03060 (QSJ13_03060) - 641280..641723 (+) 444 WP_001246675.1 SRPBCC family protein -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26625.55 Da        Isoelectric Point: 9.3468

>NTDB_id=847054 QSJ13_RS03030 WP_000594588.1 636329..637030(+) (xcpW) [Acinetobacter baumannii strain XH2146]
MIKNKYIHIRSIDSRLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQDGNS

Nucleotide


Download         Length: 702 bp        

>NTDB_id=847054 QSJ13_RS03030 WP_000594588.1 636329..637030(+) (xcpW) [Acinetobacter baumannii strain XH2146]
ATGATAAAAAATAAATATATTCACATCCGAAGCATTGATTCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGTCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGCAAAGCAGGCGTAACGGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGATCAAAAAAAACTATATCGTCTTAAATATACAAATTTGAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATACCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAGTGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCACAGGACGGTAATTCATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(27-49)

Type II secretion system (T2SS), protein J (T2SSJ)

(83-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

99.142

100

0.991