Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   QQM35_RS10890 Genome accession   NZ_CP128355
Coordinates   2171870..2172586 (+) Length   238 a.a.
NCBI ID   WP_251518352.1    Uniprot ID   -
Organism   Staphylococcus hsinchuensis strain H164     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2166870..2177586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQM35_RS10865 (QQM35_10855) - 2167497..2168126 (+) 630 WP_251942670.1 nitroreductase family protein -
  QQM35_RS10870 (QQM35_10860) - 2168253..2169038 (+) 786 WP_251518359.1 carbon-nitrogen family hydrolase -
  QQM35_RS10875 (QQM35_10865) - 2169824..2170393 (+) 570 WP_251518357.1 accessory gene regulator AgrB -
  QQM35_RS10880 (QQM35_10870) - 2170396..2170533 (+) 138 WP_251518356.1 cyclic lactone autoinducer peptide -
  QQM35_RS10885 (QQM35_10875) - 2170562..2171851 (+) 1290 WP_342610392.1 GHKL domain-containing protein -
  QQM35_RS10890 (QQM35_10880) agrA 2171870..2172586 (+) 717 WP_251518352.1 LytTR family DNA-binding domain-containing protein Regulator
  QQM35_RS10895 (QQM35_10885) - 2172636..2173601 (-) 966 WP_251518350.1 carbohydrate kinase -
  QQM35_RS10900 (QQM35_10890) - 2173564..2175081 (-) 1518 WP_251518348.1 sucrose-6-phosphate hydrolase -
  QQM35_RS10905 (QQM35_10895) - 2175173..2176135 (-) 963 WP_251518346.1 LacI family DNA-binding transcriptional regulator -
  QQM35_RS10910 (QQM35_10900) - 2176332..2176556 (-) 225 WP_251518344.1 sulfurtransferase TusA family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27909.75 Da        Isoelectric Point: 4.9590

>NTDB_id=847003 QQM35_RS10890 WP_251518352.1 2171870..2172586(+) (agrA) [Staphylococcus hsinchuensis strain H164]
MKIFICEDDVKQRENMMSIINNYIMIEEKPMSIELATDDPYEVIETAKETSDIGCYFLDIQLNADINGIKLASEIRKFDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPDELQSRIIDCIETAEKRLNLLSKEDNVETIELKRGSNSVYVQYDDVM
FFESSSKSHRLIAHLDNRQIEFYGSLKELHQLDDRFFRCHNSFVVNRHNIESIDSKNRIVYFKNKEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=847003 QQM35_RS10890 WP_251518352.1 2171870..2172586(+) (agrA) [Staphylococcus hsinchuensis strain H164]
ATGAAGATTTTCATTTGTGAAGATGACGTAAAACAACGTGAGAATATGATGTCGATTATTAACAACTACATTATGATTGA
AGAAAAACCGATGTCTATTGAATTAGCAACAGACGACCCATATGAAGTCATCGAAACAGCTAAAGAAACAAGCGATATTG
GATGTTACTTTTTAGATATTCAACTGAATGCAGATATTAATGGCATCAAACTTGCTAGCGAAATTCGTAAGTTTGACCCT
GTCGGTAATATTATATTTGTAACGAGTCACAGCGAGCTTACTTACCTCACCTTCGTTTATAAAGTTGCCGCTATGGACTT
CATCTTTAAAGACGATCCTGATGAACTACAGTCAAGAATCATTGACTGTATTGAAACAGCGGAAAAACGTTTGAATCTAC
TTTCAAAAGAAGATAACGTGGAAACAATTGAGCTTAAAAGAGGAAGTAATTCAGTGTATGTTCAGTACGATGACGTCATG
TTCTTTGAATCCTCATCCAAATCTCATCGTCTTATCGCCCATCTAGATAATCGACAAATTGAATTTTATGGTAGTCTTAA
AGAATTACACCAGTTAGATGATCGCTTCTTTAGATGTCATAATAGTTTTGTAGTCAACAGACATAATATCGAATCAATTG
ATTCAAAAAACAGAATTGTATATTTCAAAAATAAAGAACATTGCTATGCTTCAGTAAGAAATGTTAAAAAAATATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

86.975

100

0.87