Detailed information NTG0846996

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: V2H88_RS05970
• Genome accession: NZ_CP144351
• Coordinates: 1284444..1286951 (+)
• Length: 835 a.a.
• NCBI ID: WP_153928993.1
• Uniprot ID: -
• Organism: Riemerella anatipestifer strain RA-3M
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 1279444..1291951

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V2H88_RS05945 (V2H88_05945)	-	1279909..1280163 (+)	255	WP_014615080.1	hypothetical protein	-
V2H88_RS05950 (V2H88_05950)	rnr	1280238..1282403 (-)	2166	WP_004920628.1	ribonuclease R	-
V2H88_RS05955 (V2H88_05955)	rpiB	1282469..1282900 (-)	432	WP_004920632.1	ribose 5-phosphate isomerase B	-
V2H88_RS05960 (V2H88_05960)	-	1282985..1284088 (-)	1104	WP_004920635.1	glycosyltransferase	-
V2H88_RS05965 (V2H88_05965)	-	1284085..1284297 (-)	213	WP_331813123.1	uroporphyrinogen decarboxylase	-
V2H88_RS05970 (V2H88_05970)	clpC	1284444..1286951 (+)	2508	WP_153928993.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
V2H88_RS05975 (V2H88_05975)	-	1287025..1287990 (+)	966	WP_214192589.1	Gfo/Idh/MocA family protein	-
V2H88_RS05980 (V2H88_05980)	-	1288012..1288431 (+)	420	WP_004920646.1	SufE family protein	-
V2H88_RS05985 (V2H88_05985)	-	1288441..1289403 (+)	963	WP_004920649.1	glycosyltransferase family 9 protein	-
V2H88_RS05990 (V2H88_05990)	-	1289403..1290305 (+)	903	WP_331813124.1	glycosyltransferase family 2 protein	-
V2H88_RS05995 (V2H88_05995)	surE	1290326..1291093 (-)	768	WP_154469001.1	5'/3'-nucleotidase SurE	-

Sequence

Protein

• Length: 835 a.a.
• Molecular weight: 94217.77 Da
• Isoelectric Point: 5.6508

>NTDB_id=846996 V2H88_RS05970 WP_153928993.1 1284444..1286951(+) (clpC) [Riemerella anatipestifer strain RA-3M]
MMSNKFSGGLDKVLKASAKEAKRLESEFLNTEHLLLGIIKTDNSAREILQNLQVDLTQIRRKIEALNSLSSNVFPPKEME
VIPFTKMADYALKRADLESKSYRSEHINTVHLLLGILYKMEDPTTQILESYDVDYEAVTKEYRTMLEQNGISPKMSSEYD
DSNEERESFGQPNKSSSSIGTAKSKTPTLDNFGRDLTALAKEGRLDPVIGREKEIERVSQILSRRKKNNPLLIGEPGVGK
SAIAEGLALRIHQKRVSRVLYNKRVITLDLASLVAGTKYRGQFEERMKAIMTELEKNRDVILFIDELHTIVGAGGSTGSL
DASNMFKPALARGEIQCIGATTLDEYRQHIEKDGALERRFQKVMVEPTSIEETIQILYQIKDKYEEHHNVIYTDDAIKAC
VNLTSRYITDRFLPDKAIDAMDEAGSRVYIKNMKVPTELVDFEAKIEEVKDLKQKAVKAQDYLEARRLKDEEERLQIELN
LVQEEWDRNVKEMKETVTEENVAEVVSMMSGVPVTKVGKNELDKLAEMDKNLNGKVIGQEEAVKKVVKSIQRNRTGLKDP
NRPIGTFIFLGTTGVGKTELAKVMAKELFNSEDALIRIDMSEYMEKFAVSRLVGAPPGYVGYEEGGQLTEAVRRKPYSVV
LLDEIEKAHSDVFNLLLQILDEGFVTDSLGRKIDFRNTIVILTSNIGTRQLKDFGDGVGFGTSAKKSSTDAHARSTIESA
LKKAFAPEFLNRIDDIIIFNSLEKEDIKKIIDLELNKLYQRLSKLGYTVSLTEEAKDFIAEKGWDKDFGARPLKRAVQKY
IEDLLAELLVTKQLSEGESVVLKLNEAKDALEKQN

Nucleotide

• Length: 2508 bp

>NTDB_id=846996 V2H88_RS05970 WP_153928993.1 1284444..1286951(+) (clpC) [Riemerella anatipestifer strain RA-3M]
ATGATGAGTAATAAATTTTCGGGAGGATTGGATAAAGTCCTCAAAGCGAGTGCTAAAGAAGCAAAAAGATTAGAAAGTGA
ATTTCTTAATACCGAACACCTTCTTTTAGGGATTATTAAAACAGATAATTCTGCGAGGGAAATATTACAGAATTTACAGG
TAGATTTAACCCAAATAAGACGAAAGATAGAAGCTTTAAACTCTTTAAGTTCTAATGTTTTTCCACCGAAAGAAATGGAG
GTAATTCCATTTACTAAAATGGCAGATTATGCACTTAAAAGAGCTGATTTGGAAAGTAAAAGTTACCGTTCAGAACATAT
CAATACGGTTCACTTGCTATTGGGTATTCTTTACAAAATGGAAGACCCTACCACTCAGATTCTAGAAAGTTATGATGTAG
ATTATGAGGCGGTTACTAAAGAGTATCGCACGATGTTAGAGCAGAACGGGATTTCGCCTAAAATGAGTAGTGAGTATGAT
GATAGTAATGAGGAAAGAGAAAGCTTTGGGCAACCTAATAAATCAAGTAGCAGTATCGGAACTGCAAAAAGTAAAACACC
TACCTTGGATAATTTCGGTAGAGATTTAACGGCTTTGGCTAAGGAAGGAAGGTTAGACCCAGTAATTGGTAGGGAAAAAG
AGATAGAACGAGTATCACAAATTCTGTCCAGAAGAAAGAAAAATAATCCACTCCTTATTGGAGAGCCAGGTGTGGGGAAA
TCTGCTATTGCAGAGGGGTTAGCATTAAGGATACATCAGAAAAGAGTTTCTCGTGTATTGTACAACAAGCGTGTAATTAC
TTTAGATTTAGCAAGTTTGGTTGCGGGTACAAAGTACAGAGGTCAGTTTGAGGAAAGAATGAAAGCAATTATGACAGAAC
TAGAAAAAAATAGAGATGTCATTTTGTTCATAGACGAGTTGCATACTATTGTAGGGGCGGGAGGTTCTACGGGAAGTTTA
GATGCGTCTAATATGTTCAAACCTGCTTTGGCAAGGGGAGAAATACAATGCATTGGAGCTACTACTTTAGATGAGTACAG
ACAGCATATAGAGAAAGATGGTGCTTTGGAGAGACGTTTCCAAAAAGTAATGGTAGAGCCGACTTCCATAGAAGAAACCA
TTCAGATTTTGTATCAAATTAAAGATAAGTACGAAGAACATCACAATGTAATTTATACAGATGACGCTATCAAGGCTTGT
GTTAATCTTACCTCTAGATACATCACAGATAGATTTTTACCAGATAAAGCCATAGATGCTATGGACGAAGCGGGTTCTAG
GGTTTACATTAAAAATATGAAAGTCCCTACCGAACTTGTAGATTTTGAAGCCAAAATAGAAGAAGTTAAAGACCTTAAAC
AAAAAGCGGTTAAAGCTCAAGATTACCTAGAAGCGAGAAGGCTTAAAGATGAAGAAGAGCGTTTACAAATAGAACTTAAT
TTGGTTCAGGAAGAATGGGATAGAAATGTAAAAGAGATGAAAGAAACGGTTACGGAGGAGAATGTCGCAGAAGTAGTATC
AATGATGAGTGGTGTTCCTGTAACTAAAGTTGGCAAAAACGAACTTGATAAACTTGCCGAAATGGACAAAAACCTTAATG
GTAAGGTAATTGGTCAAGAAGAAGCCGTTAAAAAAGTAGTGAAATCTATCCAAAGAAATAGAACAGGACTAAAAGACCCT
AACCGTCCTATTGGTACTTTTATTTTCCTAGGAACAACAGGAGTTGGTAAAACAGAGCTAGCTAAAGTGATGGCTAAGGA
ATTATTCAACTCCGAAGATGCACTCATAAGAATAGATATGAGCGAATATATGGAGAAATTTGCGGTGTCTAGACTTGTAG
GGGCGCCTCCAGGATATGTGGGGTATGAAGAAGGCGGACAACTTACAGAAGCCGTTAGAAGAAAGCCTTATTCGGTAGTG
CTTTTAGATGAGATAGAAAAAGCTCACTCTGATGTGTTTAACCTATTGTTGCAGATTTTAGATGAAGGTTTCGTAACCGA
TAGTTTGGGTAGAAAAATAGACTTTAGAAATACGATTGTTATTTTGACCTCTAACATTGGTACACGCCAGCTGAAAGACT
TTGGTGATGGGGTAGGCTTCGGAACCTCAGCGAAAAAATCTAGTACCGATGCCCACGCAAGAAGTACGATAGAGTCGGCT
CTTAAAAAGGCATTTGCTCCAGAGTTTTTAAATAGAATAGATGATATTATTATTTTCAACTCATTAGAGAAAGAAGATAT
TAAGAAAATTATAGATTTAGAACTTAATAAACTTTACCAAAGGTTAAGTAAGTTGGGTTATACTGTGAGCCTTACAGAGG
AAGCCAAGGACTTTATTGCTGAGAAAGGTTGGGATAAAGACTTTGGTGCTAGACCACTGAAAAGAGCGGTACAAAAGTAT
ATAGAAGATTTACTAGCCGAACTTTTGGTAACCAAACAATTAAGTGAAGGCGAAAGTGTAGTCTTAAAACTAAATGAAGC
TAAAGACGCTTTAGAAAAACAAAATTAA

Domains

Predicted by InterProScan.

• Clp amino terminal domain, pathogenicity island component (Clp_N) (18-65)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (95-144)

• ATPase family associated with various cellular activities (AAA) (AAA) (231-361)

• AAA domain (Cdc48 subfamily) (AAA_2) (562-736)

• AAA lid domain (AAA_lid_9) (369-471)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (742-821)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	48.259	99.76	0.481
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	45.2	98.563	0.446
clpC	Streptococcus mutans UA159	42.036	100	0.42
clpC	Streptococcus thermophilus LMG 18311	40.024	100	0.406
clpC	Streptococcus thermophilus LMD-9	39.906	100	0.405
clpC	Streptococcus pneumoniae D39	40.22	97.964	0.394
clpC	Streptococcus pneumoniae Rx1	40.22	97.964	0.394
clpC	Streptococcus pneumoniae TIGR4	40.073	98.323	0.394
clpC	Lactococcus lactis subsp. cremoris KW2	49.445	75.569	0.374
clpE	Streptococcus mutans UA159	49.84	74.731	0.372
clpE	Streptococcus pneumoniae TIGR4	47.476	75.928	0.36
clpE	Streptococcus pneumoniae Rx1	47.476	75.928	0.36
clpE	Streptococcus pneumoniae D39	47.476	75.928	0.36
clpE	Streptococcus pneumoniae R6	47.476	75.928	0.36