Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   QQM35_RS08860 Genome accession   NZ_CP128355
Coordinates   1781468..1782442 (-) Length   324 a.a.
NCBI ID   WP_251942889.1    Uniprot ID   -
Organism   Staphylococcus hsinchuensis strain H164     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1776468..1787442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQM35_RS08825 (QQM35_08815) gcvT 1776992..1778083 (-) 1092 WP_251520668.1 glycine cleavage system aminomethyltransferase GcvT -
  QQM35_RS08830 (QQM35_08820) - 1778295..1778768 (-) 474 WP_251520970.1 shikimate kinase -
  QQM35_RS08835 (QQM35_08825) - 1778975..1779412 (-) 438 WP_251520665.1 ComGF family competence protein -
  QQM35_RS08840 (QQM35_08830) - 1779387..1779683 (-) 297 WP_251520662.1 hypothetical protein -
  QQM35_RS08845 (QQM35_08835) comGD 1779664..1780104 (-) 441 WP_251520659.1 competence type IV pilus minor pilin ComGD -
  QQM35_RS08850 (QQM35_08840) comGC 1780091..1780411 (-) 321 WP_251520656.1 competence type IV pilus major pilin ComGC Machinery gene
  QQM35_RS08855 (QQM35_08845) comGB 1780429..1781496 (-) 1068 WP_251942891.1 competence type IV pilus assembly protein ComGB -
  QQM35_RS08860 (QQM35_08850) comGA 1781468..1782442 (-) 975 WP_251942889.1 competence type IV pilus ATPase ComGA Machinery gene
  QQM35_RS08865 (QQM35_08855) - 1782495..1783118 (-) 624 WP_251520650.1 MBL fold metallo-hydrolase -
  QQM35_RS08870 (QQM35_08860) - 1783118..1783444 (-) 327 WP_251520646.1 MTH1187 family thiamine-binding protein -
  QQM35_RS08875 (QQM35_08865) - 1783444..1784430 (-) 987 WP_251942885.1 glucokinase -
  QQM35_RS08880 (QQM35_08870) - 1784830..1785033 (-) 204 WP_251520638.1 YqgQ family protein -
  QQM35_RS08885 (QQM35_08875) - 1785035..1786474 (-) 1440 WP_251520635.1 rhomboid family intramembrane serine protease -
  QQM35_RS08890 (QQM35_08880) - 1786486..1787028 (-) 543 WP_251520632.1 5-formyltetrahydrofolate cyclo-ligase -

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 37057.99 Da        Isoelectric Point: 8.9574

>NTDB_id=846992 QQM35_RS08860 WP_251942889.1 1781468..1782442(-) (comGA) [Staphylococcus hsinchuensis strain H164]
MKQLFRNIINKAIEQEASDIHFIPSEQEVALKFRVNDQFIDVETIQLQLYKKLLTFMKYQAGLDVSNHNSAQSGRHLYKL
KQLYFLRISTLPLSLGNESCVIRIIPQYFQKQSQVNNIDNLYRLMNKKQGLILFSGPTGSGKSTLMYNMVLYAKEHLNLN
IITVEDPVERLVKGITQISINEKAGINYASSFKAILRCDPDVILIGEIRDASIAKYVIQASLSGHLVLSTLHSSDCKGAL
LRLLEMGISKQEICQSIISMLSQRLVTTSDQQRKLIYEHLTKNDIKYFFDNGLSLPNDFQNLTYYLKQMSKEGVICESTI
ERYL

Nucleotide


Download         Length: 975 bp        

>NTDB_id=846992 QQM35_RS08860 WP_251942889.1 1781468..1782442(-) (comGA) [Staphylococcus hsinchuensis strain H164]
TTGAAACAGTTGTTTCGTAATATAATTAATAAAGCCATTGAACAAGAAGCGAGTGATATTCATTTTATCCCGTCAGAACA
AGAGGTCGCGCTCAAATTTCGTGTAAATGACCAGTTTATTGATGTAGAGACGATACAATTACAGCTTTATAAGAAATTAT
TAACCTTTATGAAATATCAAGCTGGTTTAGATGTTTCAAATCATAACAGTGCCCAAAGTGGTAGACACTTGTATAAATTA
AAGCAATTGTATTTTTTACGTATATCAACGTTACCTTTGTCACTTGGAAATGAAAGTTGTGTTATCCGCATTATTCCCCA
ATATTTTCAAAAGCAAAGCCAAGTAAATAATATTGATAATTTATACCGGTTAATGAATAAGAAACAAGGATTGATATTAT
TTAGTGGGCCTACTGGATCAGGTAAGAGCACTTTAATGTATAACATGGTATTGTATGCGAAAGAACATTTAAATCTCAAT
ATCATAACTGTAGAAGATCCTGTTGAAAGACTAGTGAAAGGCATAACTCAAATTTCAATAAATGAAAAGGCAGGGATTAA
TTATGCTTCTTCATTTAAAGCGATATTAAGGTGTGATCCCGATGTGATTTTAATTGGTGAAATAAGAGATGCTTCAATTG
CTAAATATGTTATCCAAGCTAGTCTTAGCGGTCACCTCGTTTTATCTACCTTACATTCCAGTGATTGTAAAGGAGCATTG
TTAAGATTATTAGAAATGGGAATCAGTAAACAAGAAATATGCCAATCTATTATAAGCATGCTTAGTCAACGTTTAGTAAC
AACATCTGATCAACAAAGAAAATTAATTTATGAGCATCTCACAAAGAATGATATTAAATACTTCTTCGATAATGGTTTAT
CATTACCTAATGATTTTCAAAACTTAACATATTACCTAAAACAAATGTCGAAGGAGGGAGTGATTTGTGAATCAACGATT
GAAAGATATTTATAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Staphylococcus aureus MW2

62.963

100

0.63
  comGA Staphylococcus aureus N315

62.963

100

0.63