Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   QR290_RS25445 Genome accession   NZ_CP128260
Coordinates   5664822..5666189 (-) Length   455 a.a.
NCBI ID   WP_114885656.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain PH.SM     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5659822..5671189
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QR290_RS25415 (QR290_25415) - 5660060..5660770 (+) 711 WP_289203841.1 GntR family transcriptional regulator -
  QR290_RS25420 (QR290_25420) yjiA 5660884..5661861 (-) 978 WP_115080002.1 GTPase -
  QR290_RS25425 (QR290_25425) - 5661863..5661997 (+) 135 Protein_4996 DUF4381 domain-containing protein -
  QR290_RS25430 (QR290_25430) - 5662026..5662223 (-) 198 WP_003228401.1 YbdD/YjiX family protein -
  QR290_RS25435 (QR290_25435) - 5662239..5664305 (-) 2067 WP_115079274.1 carbon starvation CstA family protein -
  QR290_RS25440 (QR290_25440) - 5664465..5664821 (+) 357 WP_115079275.1 PilZ domain-containing protein -
  QR290_RS25445 (QR290_25445) radA 5664822..5666189 (-) 1368 WP_114885656.1 DNA repair protein RadA Machinery gene
  QR290_RS25450 (QR290_25450) - 5666334..5667872 (-) 1539 WP_289203842.1 catalase -
  QR290_RS25455 (QR290_25455) mscL 5668158..5668571 (+) 414 WP_041475433.1 large-conductance mechanosensitive channel protein MscL -
  QR290_RS25460 (QR290_25460) - 5668604..5669380 (-) 777 WP_289203843.1 ferredoxin--NADP reductase -
  QR290_RS25465 (QR290_25465) - 5669681..5670388 (+) 708 WP_115079278.1 autoinducer binding domain-containing protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48689.13 Da        Isoelectric Point: 6.8987

>NTDB_id=846929 QR290_RS25445 WP_114885656.1 5664822..5666189(-) (radA) [Pseudomonas fluorescens strain PH.SM]
MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLTETMVESGGAAAPSGRTGWAGQQAQIKTLAEVSIEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLAKSMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA
TARQEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPAGLQIIAVTRLEQALDSLFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=846929 QR290_RS25445 WP_114885656.1 5664822..5666189(-) (radA) [Pseudomonas fluorescens strain PH.SM]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACTGAGTGCGGCGCAACCTTTCCCAAGTGGGCCGGGCAGTGCGGCGAATG
CGGTGCCTGGAATACCCTGACCGAAACCATGGTCGAGAGCGGCGGTGCCGCCGCCCCGAGCGGGCGCACCGGCTGGGCCG
GGCAGCAGGCCCAGATCAAGACCCTGGCCGAAGTCAGCATCGAAGAAATTCCACGTTTTTCCACAGCCTCCGGCGAGCTC
GACCGAGTGCTCGGCGGTGGTCTGGTGGACGGTTCGGTGGTGCTGATCGGTGGTGATCCTGGCATCGGCAAATCGACAAT
TCTGTTGCAGACCCTGTGCAACCTCGCCAAGAGCATGCCGGCGCTGTACGTCACCGGCGAAGAATCCCAGCAACAAGTTG
CGATGCGAGCCCGTCGCCTTGGCCTGCCGCAGGATCAATTGCGGGTCATGACCGAAACCTGCATCGAAACCATCATCGCC
ACCGCCCGTCAGGAAAAACCCAAGGTGATGGTGATCGATTCGATCCAGACGATTTTCACCGAACAGCTGCAATCGGCACC
GGGCGGCGTGTCCCAGGTTCGCGAGAGTGCGGCGCTTCTGGTGCGCTATGCCAAGCAAAGCGGCACGGCGATTTTCCTGG
TCGGCCACGTGACCAAGGAGGGCGCGCTCGCAGGGCCGCGGGTTCTGGAGCACATGGTTGATACCGTGTTGTATTTCGAA
GGCGAGTCCGACGGTCGGTTGCGTTTGCTGCGAGCGGTGAAAAACCGTTTCGGTGCAGTCAACGAACTCGGCGTGTTCGG
CATGACCGACAAGGGCCTGAAAGAAGTCTCCAACCCTTCGGCGATCTTTCTCACACGTGCTCAGGAAGAAGTCCCGGGCA
GCGTGGTCATGGCGACGTGGGAAGGCACCCGGCCGATGCTGGTGGAGGTCCAGGCGCTGGTGGATGACAGTCATCTGGCC
AACCCGCGTCGGGTCACGCTGGGTCTGGATCAGAATCGTCTGGCGATGCTGTTGGCAGTGCTACACCGTCATGGCGGCAT
TCCGACCCACGATCAGGACGTGTTCCTCAACGTGGTCGGCGGGGTGAAGGTGTTGGAAACCGCTTCTGACCTGGCGTTGA
TGGCAGCGGTCATGTCAAGTCTGCGCAACCGGCCGTTGCCTCATGATCTGCTGGTGTTCGGTGAAGTCGGCCTGTCCGGC
GAAGTGCGTCCCGTGCCGAGCGGTCAGGAGCGATTGAAGGAAGCCGCCAAGCACGGTTTCAAGCGCGCGATCGTACCCAA
GGGCAACGCGCCGAAGGAAGCGCCGGCAGGCTTGCAGATCATTGCGGTGACGCGGCTGGAGCAGGCGCTGGATTCACTCT
TCGAGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(81-221)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.234

100

0.495
  radA Streptococcus pneumoniae Rx1

46.304

100

0.468
  radA Streptococcus pneumoniae D39

46.304

100

0.468
  radA Streptococcus pneumoniae TIGR4

46.304

100

0.468
  radA Streptococcus pneumoniae R6

46.304

100

0.468
  radA Streptococcus mitis NCTC 12261

46.087

100

0.466
  radA Streptococcus mitis SK321

46.272

100

0.464