Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   QMG89_RS20325 Genome accession   NZ_AP027191
Coordinates   3828991..3829506 (-) Length   171 a.a.
NCBI ID   WP_001130207.1    Uniprot ID   -
Organism   Escherichia coli strain 10153     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3823991..3834506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMG89_RS20300 (M10153_3880) ygaZ 3824390..3825127 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  QMG89_RS20305 (M10153_3881) ygaH 3825117..3825452 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  QMG89_RS20310 (M10153_3882) emrR 3825543..3826073 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  QMG89_RS20315 (M10153_3883) emrA 3826200..3827372 (+) 1173 WP_001448625.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  QMG89_RS20320 (M10153_3884) emrB 3827389..3828927 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  QMG89_RS20325 (M10153_3885) luxS 3828991..3829506 (-) 516 WP_001130207.1 S-ribosylhomocysteine lyase Regulator
  QMG89_RS20330 (M10153_3886) gshA 3829656..3831212 (-) 1557 WP_000611802.1 glutamate--cysteine ligase -
  QMG89_RS20335 (M10153_3887) yqaA 3831285..3831713 (-) 429 WP_001287457.1 YqaA family protein -
  QMG89_RS20340 (M10153_3888) yqaB 3831710..3832276 (-) 567 WP_000273313.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  QMG89_RS20370 (M10153_3889) csrA 3833601..3833786 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19430.26 Da        Isoelectric Point: 5.2597

>NTDB_id=84689 QMG89_RS20325 WP_001130207.1 3828991..3829506(-) (luxS) [Escherichia coli strain 10153]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGKGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=84689 QMG89_RS20325 WP_001130207.1 3828991..3829506(-) (luxS) [Escherichia coli strain 10153]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAAGGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment