Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   N7E01_RS18670 Genome accession   NZ_CP128233
Coordinates   1437509..1437982 (-) Length   157 a.a.
NCBI ID   WP_350495013.1    Uniprot ID   -
Organism   Neopusillimonas aromaticivorans strain CC-YST667     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1432509..1442982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7E01_RS07775 (N7E01_07775) - 1432622..1433828 (+) 1207 Protein_1557 GGDEF domain-containing phosphodiesterase -
  N7E01_RS07780 (N7E01_07780) - 1433911..1435521 (+) 1611 WP_289175382.1 peptide chain release factor 3 -
  N7E01_RS07785 (N7E01_07785) - 1435613..1435744 (+) 132 WP_289175384.1 hypothetical protein -
  N7E01_RS07790 (N7E01_07790) - 1435926..1436282 (+) 357 WP_289175385.1 hypothetical protein -
  N7E01_RS07795 (N7E01_07795) bfr 1436279..1436752 (-) 474 WP_289175387.1 bacterioferritin -
  N7E01_RS07800 (N7E01_07800) - 1436921..1437187 (-) 267 WP_289175763.1 (2Fe-2S)-binding protein -
  N7E01_RS18665 rpoN/rpoN1 1437274..1437450 (-) 177 WP_350495012.1 hypothetical protein Machinery gene
  N7E01_RS18670 rpoN/rpoN1 1437509..1437982 (-) 474 WP_350495013.1 hypothetical protein Machinery gene
  N7E01_RS18675 - 1437909..1438166 (-) 258 WP_350495014.1 hypothetical protein -
  N7E01_RS18680 - 1438610..1438716 (-) 107 Protein_1566 hypothetical protein -
  N7E01_RS07810 (N7E01_07810) - 1438715..1439242 (+) 528 WP_289175389.1 hypothetical protein -
  N7E01_RS07815 (N7E01_07815) leuA 1439600..1441293 (+) 1694 Protein_1568 2-isopropylmalate synthase -
  N7E01_RS07820 (N7E01_07820) - 1441486..1441656 (-) 171 WP_350495015.1 DUF1840 family protein -
  N7E01_RS07825 (N7E01_07825) - 1442261..1442740 (+) 480 WP_289175390.1 DUF6531 domain-containing protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17741.31 Da        Isoelectric Point: 10.4420

>NTDB_id=846883 N7E01_RS18670 WP_350495013.1 1437509..1437982(-) (rpoN/rpoN1) [Neopusillimonas aromaticivorans strain CC-YST667]
MRQAHQLILSLDPKPGRAWSSSVADYVVPELVVVKSRQGWEARLNGAIVPRVRVNPVYEQWLREDRSGADKSPIQAQLQQ
AHGLVKSVAQRFETVLRVGQCIVAHQQGFFDKGVQAMRPLVLRDIAQDLEMHESTVSRATRQKYMQTPWGSLNLNTS

Nucleotide


Download         Length: 474 bp        

>NTDB_id=846883 N7E01_RS18670 WP_350495013.1 1437509..1437982(-) (rpoN/rpoN1) [Neopusillimonas aromaticivorans strain CC-YST667]
GTGCGCCAGGCCCATCAGCTGATTTTGTCGCTCGATCCCAAGCCGGGTCGGGCCTGGTCCAGCAGTGTGGCTGACTATGT
GGTGCCCGAGCTGGTTGTGGTCAAAAGCCGCCAGGGCTGGGAGGCCCGTCTGAATGGCGCGATTGTTCCCCGGGTGCGCG
TCAACCCTGTCTATGAGCAATGGTTGCGCGAAGACCGTAGCGGTGCCGACAAGTCGCCCATACAGGCCCAGTTGCAGCAG
GCCCATGGTCTGGTCAAAAGCGTAGCGCAGCGGTTTGAAACGGTATTGCGTGTGGGGCAGTGCATCGTGGCACACCAGCA
AGGCTTCTTTGACAAGGGTGTACAGGCCATGCGTCCGCTGGTGCTTCGCGACATCGCCCAAGATCTTGAGATGCATGAAT
CCACCGTGTCACGGGCGACCCGGCAGAAGTACATGCAGACCCCGTGGGGGTCTTTGAACTTAAATACTTCTTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(2-58)

Sigma-54, DNA binding domain (Sigma54_DBD)

(74-155)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

50

98.089

0.49