NTDB

Overview

Name	clpC	Type	Regulator
Locus tag	VZG47_RS13060	Genome accession	NZ_CP144288
Coordinates	2494124..2496811 (-)	Length	895 a.a.
NCBI ID	WP_338430098.1	Uniprot ID	-
Organism	Synechococcus elongatus IITB5
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 2489124..2501811

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VZG47_RS13025 (VZG47_13000)	-	2489309..2490445 (+)	1137	WP_208674450.1	DUF3747 domain-containing protein	-
VZG47_RS13030 (VZG47_13005)	rplL	2490727..2491113 (-)	387	WP_338430097.1	50S ribosomal protein L7/L12	-
VZG47_RS13035 (VZG47_13010)	rplJ	2491174..2491701 (-)	528	WP_208674449.1	50S ribosomal protein L10	-
VZG47_RS13040 (VZG47_13015)	rplA	2491930..2492643 (-)	714	WP_208674448.1	50S ribosomal protein L1	-
VZG47_RS13045 (VZG47_13020)	rplK	2492715..2493140 (-)	426	WP_011377656.1	50S ribosomal protein L11	-
VZG47_RS13050 (VZG47_13025)	nusG	2493148..2493741 (-)	594	WP_222610299.1	transcription termination/antitermination protein NusG	-
VZG47_RS13055 (VZG47_13030)	secE	2493774..2494019 (-)	246	WP_011243201.1	preprotein translocase subunit SecE	-
VZG47_RS13060 (VZG47_13035)	clpC	2494124..2496811 (-)	2688	WP_338430098.1	ATP-dependent chaperone ClpB	Regulator
VZG47_RS13065 (VZG47_13040)	gloA	2496899..2497312 (-)	414	WP_338430099.1	lactoylglutathione lyase	-
VZG47_RS13070 (VZG47_13045)	eno	2497522..2498814 (+)	1293	WP_338430100.1	phosphopyruvate hydratase	-
VZG47_RS13075 (VZG47_13050)	-	2499058..2500824 (+)	1767	WP_338430101.1	ABC transporter ATP-binding protein	-

Sequence

Protein

Download Length: 895 a.a. Molecular weight: 100023.33 Da Isoelectric Point: 4.6779

                                >NTDB_id=846863 VZG47_RS13060 WP_338430098.1 2494124..2496811(-) (clpC) [Synechococcus elongatus IITB5]

MQPTDPNRFTDQAWDAIVESQTVARQLRQQQLEVEHVLLALLDQESGVAAEILAKAGVAVANLRQPLEDFARRQPRNATG

TQLYLGRGLDRLLDLAERARELWQDEFIGVEHLLMGFVEDDRIGRRLCQGFKLDAKTLETTIQELRSPAADEAEAEESEP

SYPFLSKYGRDLTALAEQEKLDPVIGRDLEIRRVIQVLSRRSKNNPVLIGEPGVGKTAIAEGLAQRIVAGEVPDSLKQRR

LISLDMGSLIAGAKYRGEFEERLRAVLHEVTHSDGQMVLFIDELHTVVGAGAGQQGSAMDAGNLLKPMLARGELRCIGAT

TTDEYRRTIEKDPALERRFQQVYVSQPSVEDTIAILRGLKERYEGHHGVKITDGALMAAAKLSHRYISDRFLPDKAIDLI

DEASAQLKMEITSKPSELEDLERRLLQLEMEQLSLSGENGQATVHSDRLQQIQTELQTLQEQQARLNQQWQQEKQLLEEL

GHLQEEEETLRQQVNQAEREHDLNKGAELKFGQLEALQHQRQAIEEQIQALHANGQTLLREQVEEADIAEIVARWTNIPV

QRLLESERQKLLQLESFLHQRVIGQDEAVVAVAAAIRRARAGMKDPSRPIGSFLFLGPTGVGKTELARALANCLFDAEDA

LIRFDMSEYMEKNSISRLIGAPPGYIGYEEGGQLSEAIRRHPYAVVLFDEVEKAHPDVFNLLLQVLDDGRITDSQGRTID

FCNAVIVMTSNIGSQFILEMGEEDTSLEAVELRVLGALRQHFRPEFLNRIDDTILFQPLSRSQLQQIVDIQLQRLKRLLA

EQAIALTVTPAAAANLADRGYDPVYGARPLKRAIQRLVENPVASLILEQQFEAGNSLIVDVDAAGQLQFQVSKPVAATVV

EPDDSPAIEVEAIPS

Nucleotide

Download Length: 2688 bp

                                >NTDB_id=846863 VZG47_RS13060 WP_338430098.1 2494124..2496811(-) (clpC) [Synechococcus elongatus IITB5]

ATGCAGCCCACCGACCCCAATCGTTTTACAGACCAAGCCTGGGATGCGATCGTCGAATCGCAAACTGTGGCTCGCCAACT

GCGGCAGCAGCAGTTGGAGGTTGAGCACGTCCTGCTGGCCTTGCTTGATCAGGAGTCGGGGGTTGCAGCGGAAATTTTGG

CGAAGGCAGGGGTAGCCGTTGCGAATCTGCGGCAGCCGCTTGAGGATTTTGCGCGGCGACAACCTCGTAATGCCACAGGG

ACTCAGCTCTACCTCGGGCGCGGCCTCGATCGCCTGCTGGATTTAGCGGAACGGGCACGAGAACTCTGGCAAGACGAGTT

CATCGGCGTTGAACATTTGCTGATGGGCTTTGTCGAGGACGATCGGATTGGCCGCCGCCTCTGCCAAGGCTTCAAGCTCG

ATGCCAAAACGCTGGAGACAACCATTCAAGAGCTGCGATCGCCCGCTGCCGATGAGGCCGAAGCGGAAGAAAGCGAGCCC

AGCTATCCTTTCCTCAGCAAGTATGGTCGTGATCTGACGGCGCTGGCCGAGCAAGAAAAACTCGATCCGGTGATCGGCCG

CGATCTAGAAATTCGTCGCGTCATTCAAGTGCTGTCGCGGCGCAGCAAGAACAATCCCGTGCTGATCGGTGAACCGGGAG

TGGGTAAAACTGCGATCGCGGAAGGCTTAGCCCAGCGGATTGTCGCCGGTGAAGTACCGGATTCGCTCAAGCAACGGCGG

CTGATCAGCCTCGACATGGGCTCGCTGATTGCTGGCGCGAAATATCGCGGTGAATTCGAGGAGCGGTTGCGGGCAGTTCT

GCACGAAGTCACCCACTCCGATGGCCAGATGGTGCTGTTCATCGACGAGTTGCACACCGTCGTCGGAGCTGGCGCGGGTC

AGCAAGGCAGCGCCATGGATGCGGGCAACCTGCTCAAGCCGATGCTGGCACGGGGTGAACTGCGCTGTATCGGGGCCACA

ACGACCGACGAGTATCGCCGCACGATCGAGAAGGATCCGGCCCTAGAACGCCGCTTCCAACAGGTCTACGTCAGCCAGCC

CAGCGTCGAAGACACGATCGCGATTCTGCGTGGTCTCAAAGAACGGTACGAAGGCCACCACGGGGTCAAGATTACCGACG

GTGCTCTGATGGCCGCAGCCAAACTCTCGCATCGCTACATCAGCGATCGCTTCTTGCCGGACAAGGCGATCGACCTAATC

GACGAAGCTTCGGCCCAACTGAAGATGGAGATCACCTCTAAGCCCAGTGAGTTGGAGGATTTGGAACGACGGCTCCTGCA

ACTGGAAATGGAGCAGCTTTCCCTCAGCGGAGAGAACGGGCAGGCAACAGTTCACAGCGATCGCCTTCAGCAAATCCAAA

CAGAACTACAGACACTCCAGGAACAACAAGCCCGACTCAATCAGCAGTGGCAGCAGGAAAAACAACTGCTAGAAGAACTG

GGCCATCTGCAGGAGGAAGAAGAAACTCTGCGTCAGCAGGTCAATCAGGCCGAGCGCGAACATGACCTCAACAAAGGCGC

TGAGCTGAAATTTGGGCAACTGGAAGCCCTGCAACATCAGCGGCAGGCGATCGAGGAACAGATTCAAGCCCTGCACGCCA

ATGGTCAAACCTTGCTGCGCGAGCAAGTGGAAGAGGCTGATATTGCCGAAATTGTGGCGCGCTGGACCAACATTCCCGTG

CAGCGCCTGCTGGAATCGGAACGCCAGAAGCTACTCCAGCTCGAAAGCTTCTTGCACCAACGGGTGATTGGCCAAGATGA

AGCGGTCGTCGCTGTCGCTGCCGCGATTCGCCGTGCCCGCGCTGGCATGAAAGATCCCAGCCGCCCGATCGGTTCTTTCC

TCTTCCTCGGGCCAACGGGCGTCGGTAAAACCGAACTGGCTCGCGCCCTCGCCAACTGTCTGTTTGATGCGGAAGATGCA

CTGATCCGCTTCGACATGTCGGAGTACATGGAGAAGAATTCCATCTCGCGGCTAATTGGTGCGCCCCCCGGCTACATCGG

CTACGAAGAGGGCGGTCAGCTCTCAGAAGCCATCCGCCGCCATCCCTACGCGGTAGTGCTGTTCGATGAAGTCGAGAAGG

CGCACCCCGATGTCTTCAACCTGTTGCTGCAGGTTCTGGATGATGGCCGGATTACCGACTCACAAGGCCGCACCATCGAC

TTCTGCAACGCCGTGATTGTGATGACTAGCAACATCGGCAGCCAGTTCATTCTGGAAATGGGCGAAGAAGACACCAGCCT

CGAAGCTGTGGAGCTGAGAGTACTAGGGGCGCTAAGGCAGCACTTCCGTCCGGAATTTCTCAACCGAATTGACGACACAA

TCCTGTTCCAGCCACTCTCGCGCAGCCAGCTCCAGCAAATTGTTGACATCCAGTTACAGCGACTGAAACGGCTACTGGCA

GAACAGGCGATCGCCCTCACGGTTACACCAGCAGCGGCGGCCAATCTCGCCGATCGTGGCTACGACCCGGTCTACGGGGC

ACGCCCACTCAAACGAGCAATCCAGCGTTTGGTCGAAAATCCGGTGGCTTCGTTGATTCTCGAGCAGCAGTTTGAAGCCG

GCAACTCGCTAATTGTCGATGTGGATGCCGCAGGACAGTTGCAATTTCAAGTCAGTAAACCTGTTGCAGCGACTGTCGTT

GAGCCGGATGATAGCCCCGCGATCGAAGTTGAAGCCATTCCCTCCTAG