Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | VZG47_RS11205 | Genome accession | NZ_CP144288 |
| Coordinates | 2163448..2165922 (-) | Length | 824 a.a. |
| NCBI ID | WP_338429834.1 | Uniprot ID | - |
| Organism | Synechococcus elongatus IITB5 | ||
| Function | degradation of ComK; degradation of DegU (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2158448..2170922
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VZG47_RS11180 (VZG47_11170) | - | 2158969..2160258 (-) | 1290 | WP_338429831.1 | ATP-binding protein | - |
| VZG47_RS11185 (VZG47_11175) | - | 2160378..2161574 (+) | 1197 | WP_338431856.1 | M20 family metallopeptidase | - |
| VZG47_RS11190 (VZG47_11180) | - | 2161571..2162320 (-) | 750 | WP_338429832.1 | TIGR00297 family protein | - |
| VZG47_RS11195 (VZG47_11185) | - | 2162371..2162808 (+) | 438 | WP_338429833.1 | VOC family protein | - |
| VZG47_RS11200 (VZG47_11190) | - | 2162948..2163289 (+) | 342 | WP_208674641.1 | hypothetical protein | - |
| VZG47_RS11205 (VZG47_11195) | clpC | 2163448..2165922 (-) | 2475 | WP_338429834.1 | ATP-dependent Clp protease ATP-binding subunit | Regulator |
| VZG47_RS11210 (VZG47_11200) | rimI | 2166066..2166665 (-) | 600 | WP_338429835.1 | ribosomal protein S18-alanine N-acetyltransferase | - |
| VZG47_RS11215 (VZG47_11205) | lysA | 2166713..2168107 (+) | 1395 | WP_338429836.1 | diaminopimelate decarboxylase | - |
| VZG47_RS11220 (VZG47_11210) | cdaA | 2168145..2169107 (+) | 963 | WP_338460785.1 | diadenylate cyclase CdaA | - |
| VZG47_RS11225 (VZG47_11215) | - | 2169104..2169859 (+) | 756 | WP_208674648.1 | isoprenyl transferase | - |
| VZG47_RS11230 (VZG47_11220) | - | 2169872..2170147 (-) | 276 | WP_338429837.1 | DUF3143 domain-containing protein | - |
| VZG47_RS11235 (VZG47_11225) | - | 2170125..2170724 (-) | 600 | WP_338429838.1 | J domain-containing protein | - |
Sequence
Protein
Download Length: 824 a.a. Molecular weight: 91273.35 Da Isoelectric Point: 5.3220
>NTDB_id=846856 VZG47_RS11205 WP_338429834.1 2163448..2165922(-) (clpC) [Synechococcus elongatus IITB5]
MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDARIEVEKIIGRGSGFVAVEIPF
TPRAKRVLELSLEEARQLGHNYIGTEHLLLGLIREGEGVAARVLENLGVDLSKVRTQVIRMLGETAEVSSGGSQGRTKTP
TLDEFGSNLTQQAADGKLDPVVGRQKEIERVIQILGRRTKNNPVLIGEPGVGKTAIAEGLAQRIATGDIPDILEDKRVVT
LDIGLLVAGTKYRGEFEERLKKIMDEIRSAGNVILVIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYR
KHIERDAALERRFQPVMVGEPSVDDTIEILRGLRERYEQHHKLKIADEALEAAAKLADRYISDRFLPDKAIDLIDEAGSR
VRLMNSQLPPAAKELDKELRQVLKDKDDAVRSQDFDKAGELRDREMEIKTQIRSIAQSKKADGTSSSDDSPIVTEEDIAH
IVASWTGVPVNKLTESESTKLLNMEETLHSRLIGQDEAVKAVSRAIRRARVGLKNPNRPIASFIFSGPTGVGKTELTKAL
AAYFFGSEEAMIRLDMSEYMERHTVSKLIGSPPGYVGYNEGGQLTEAVRRRPYTVVLLDEIEKAHPDVFNLLLQLLEDGR
LTDAKGRTVDFKNTLIILTSNIGSKVIEKGGGGLGFDFSGEDEAENQYNRIRSLVNEELKQYFRPEFLNRLDEIIVFRQL
NKAEVKEIADIMLREVFGRMQEKGITLSVTEKFKDRLVEEGYNPSYGARPLRRAIMRLLEDSLAEEFLSGKLREGDTAVV
DIGEEGKVQVIAQEKRELLPQAVE
MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDARIEVEKIIGRGSGFVAVEIPF
TPRAKRVLELSLEEARQLGHNYIGTEHLLLGLIREGEGVAARVLENLGVDLSKVRTQVIRMLGETAEVSSGGSQGRTKTP
TLDEFGSNLTQQAADGKLDPVVGRQKEIERVIQILGRRTKNNPVLIGEPGVGKTAIAEGLAQRIATGDIPDILEDKRVVT
LDIGLLVAGTKYRGEFEERLKKIMDEIRSAGNVILVIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYR
KHIERDAALERRFQPVMVGEPSVDDTIEILRGLRERYEQHHKLKIADEALEAAAKLADRYISDRFLPDKAIDLIDEAGSR
VRLMNSQLPPAAKELDKELRQVLKDKDDAVRSQDFDKAGELRDREMEIKTQIRSIAQSKKADGTSSSDDSPIVTEEDIAH
IVASWTGVPVNKLTESESTKLLNMEETLHSRLIGQDEAVKAVSRAIRRARVGLKNPNRPIASFIFSGPTGVGKTELTKAL
AAYFFGSEEAMIRLDMSEYMERHTVSKLIGSPPGYVGYNEGGQLTEAVRRRPYTVVLLDEIEKAHPDVFNLLLQLLEDGR
LTDAKGRTVDFKNTLIILTSNIGSKVIEKGGGGLGFDFSGEDEAENQYNRIRSLVNEELKQYFRPEFLNRLDEIIVFRQL
NKAEVKEIADIMLREVFGRMQEKGITLSVTEKFKDRLVEEGYNPSYGARPLRRAIMRLLEDSLAEEFLSGKLREGDTAVV
DIGEEGKVQVIAQEKRELLPQAVE
Nucleotide
Download Length: 2475 bp
>NTDB_id=846856 VZG47_RS11205 WP_338429834.1 2163448..2165922(-) (clpC) [Synechococcus elongatus IITB5]
ATGTTTGAACGCTTTACCGAAAAAGCCATTAAGGTCATCATGCTGGCTCAGGAGGAAGCGCGTCGCCTGGGTCACAACTT
CGTCGGCACCGAGCAGATTTTGCTAGGCCTCATCGGTGAAGGCACCGGCGTTGCCGCCAAAGTTCTGAAATCGATGGGCG
TCAACCTCAAGGACGCTCGTATCGAAGTTGAAAAAATTATCGGTCGTGGCTCGGGTTTTGTCGCTGTTGAGATTCCGTTT
ACGCCTCGCGCTAAGCGGGTGTTGGAACTCTCGCTAGAAGAAGCGCGGCAACTCGGTCACAACTACATTGGCACCGAGCA
CCTTCTGCTGGGCTTGATCCGTGAAGGCGAGGGCGTTGCCGCTCGCGTCCTCGAGAATTTGGGCGTCGATCTCTCGAAAG
TGCGGACACAAGTAATCCGCATGCTGGGTGAGACCGCAGAGGTTTCCAGTGGTGGTAGCCAAGGCCGGACGAAAACCCCA
ACCTTGGATGAATTCGGCTCGAACCTGACGCAGCAGGCTGCGGATGGGAAGCTCGATCCGGTGGTGGGTCGTCAGAAAGA
AATTGAGCGGGTGATCCAGATTCTGGGTCGCCGCACCAAGAACAACCCTGTGTTGATTGGCGAACCCGGCGTCGGTAAAA
CTGCGATCGCTGAAGGGTTAGCGCAGCGGATTGCCACTGGTGATATCCCGGACATTTTGGAAGATAAGCGCGTTGTCACC
CTTGATATCGGTCTGCTGGTAGCAGGCACGAAATATCGGGGTGAATTCGAAGAGCGCCTCAAGAAAATCATGGACGAGAT
CCGCTCGGCGGGGAACGTCATCTTGGTGATCGATGAAGTCCACACCTTGATCGGTGCAGGTGCGGCTGAAGGCGCAATCG
ATGCAGCTAACATCCTCAAGCCGGCACTGGCGCGGGGCGAGCTGCAGTGCATCGGTGCAACCACGCTGGATGAATACCGC
AAACATATCGAGCGTGATGCGGCCCTAGAACGTCGCTTCCAGCCAGTGATGGTGGGCGAGCCCAGCGTCGATGACACAAT
CGAAATTCTGCGCGGTTTGCGTGAGCGCTACGAGCAGCACCACAAGCTGAAAATTGCAGATGAGGCTCTAGAGGCTGCAG
CTAAGCTAGCCGATCGCTACATCAGCGATCGCTTCCTGCCCGATAAGGCAATCGACTTGATCGATGAAGCCGGTTCACGG
GTTCGCCTGATGAACTCGCAATTGCCGCCTGCTGCGAAGGAACTGGACAAGGAACTGCGTCAAGTCCTCAAGGACAAGGA
CGACGCCGTGCGTTCCCAAGACTTCGATAAAGCGGGTGAACTGCGCGATCGCGAGATGGAGATCAAAACCCAGATCCGCT
CGATCGCCCAAAGCAAGAAAGCCGATGGCACCAGCAGCAGTGATGATTCGCCGATCGTCACTGAGGAAGATATCGCGCAT
ATCGTCGCCTCTTGGACCGGCGTACCAGTCAACAAGCTGACCGAGTCGGAATCAACCAAATTGCTGAACATGGAGGAGAC
CCTCCACAGCCGCTTGATTGGTCAAGACGAAGCCGTGAAAGCTGTTTCACGAGCAATCCGTCGCGCCCGAGTTGGTCTCA
AGAACCCCAACCGTCCGATTGCCAGCTTCATCTTCAGCGGCCCGACCGGTGTTGGTAAAACCGAACTGACTAAAGCTTTG
GCGGCTTACTTCTTCGGCAGCGAAGAGGCGATGATCCGCCTTGACATGTCGGAGTACATGGAGCGCCATACCGTCAGCAA
GCTGATCGGTTCGCCTCCGGGCTATGTCGGCTATAACGAAGGCGGCCAGCTGACTGAAGCGGTTCGTCGTCGTCCCTACA
CCGTGGTCTTGCTGGACGAGATCGAGAAAGCTCACCCCGATGTCTTCAACCTGCTCTTGCAGTTACTGGAAGACGGTCGC
TTGACTGATGCCAAAGGTCGGACGGTGGACTTCAAGAACACCCTGATCATCCTGACCTCCAACATTGGCTCGAAGGTGAT
CGAGAAGGGTGGCGGCGGTCTAGGCTTTGACTTCTCGGGTGAGGATGAAGCTGAGAACCAATACAACCGCATTCGCTCCT
TGGTGAACGAAGAGCTGAAGCAATACTTCCGCCCTGAGTTCCTCAACCGCTTGGACGAAATCATCGTCTTCCGTCAGCTC
AACAAAGCGGAAGTCAAAGAAATTGCCGACATTATGTTGCGCGAGGTCTTTGGCCGGATGCAGGAAAAAGGCATCACCCT
GTCGGTCACTGAGAAGTTCAAAGACCGCTTGGTGGAAGAGGGCTACAACCCCAGCTACGGGGCACGTCCGCTTCGTCGGG
CGATCATGCGCTTGCTCGAAGATTCCTTGGCTGAGGAGTTCCTGTCTGGCAAGCTCCGCGAAGGCGACACCGCCGTCGTT
GATATTGGTGAGGAAGGCAAAGTGCAAGTAATTGCACAAGAGAAACGCGAACTCCTGCCCCAAGCAGTTGAGTAA
ATGTTTGAACGCTTTACCGAAAAAGCCATTAAGGTCATCATGCTGGCTCAGGAGGAAGCGCGTCGCCTGGGTCACAACTT
CGTCGGCACCGAGCAGATTTTGCTAGGCCTCATCGGTGAAGGCACCGGCGTTGCCGCCAAAGTTCTGAAATCGATGGGCG
TCAACCTCAAGGACGCTCGTATCGAAGTTGAAAAAATTATCGGTCGTGGCTCGGGTTTTGTCGCTGTTGAGATTCCGTTT
ACGCCTCGCGCTAAGCGGGTGTTGGAACTCTCGCTAGAAGAAGCGCGGCAACTCGGTCACAACTACATTGGCACCGAGCA
CCTTCTGCTGGGCTTGATCCGTGAAGGCGAGGGCGTTGCCGCTCGCGTCCTCGAGAATTTGGGCGTCGATCTCTCGAAAG
TGCGGACACAAGTAATCCGCATGCTGGGTGAGACCGCAGAGGTTTCCAGTGGTGGTAGCCAAGGCCGGACGAAAACCCCA
ACCTTGGATGAATTCGGCTCGAACCTGACGCAGCAGGCTGCGGATGGGAAGCTCGATCCGGTGGTGGGTCGTCAGAAAGA
AATTGAGCGGGTGATCCAGATTCTGGGTCGCCGCACCAAGAACAACCCTGTGTTGATTGGCGAACCCGGCGTCGGTAAAA
CTGCGATCGCTGAAGGGTTAGCGCAGCGGATTGCCACTGGTGATATCCCGGACATTTTGGAAGATAAGCGCGTTGTCACC
CTTGATATCGGTCTGCTGGTAGCAGGCACGAAATATCGGGGTGAATTCGAAGAGCGCCTCAAGAAAATCATGGACGAGAT
CCGCTCGGCGGGGAACGTCATCTTGGTGATCGATGAAGTCCACACCTTGATCGGTGCAGGTGCGGCTGAAGGCGCAATCG
ATGCAGCTAACATCCTCAAGCCGGCACTGGCGCGGGGCGAGCTGCAGTGCATCGGTGCAACCACGCTGGATGAATACCGC
AAACATATCGAGCGTGATGCGGCCCTAGAACGTCGCTTCCAGCCAGTGATGGTGGGCGAGCCCAGCGTCGATGACACAAT
CGAAATTCTGCGCGGTTTGCGTGAGCGCTACGAGCAGCACCACAAGCTGAAAATTGCAGATGAGGCTCTAGAGGCTGCAG
CTAAGCTAGCCGATCGCTACATCAGCGATCGCTTCCTGCCCGATAAGGCAATCGACTTGATCGATGAAGCCGGTTCACGG
GTTCGCCTGATGAACTCGCAATTGCCGCCTGCTGCGAAGGAACTGGACAAGGAACTGCGTCAAGTCCTCAAGGACAAGGA
CGACGCCGTGCGTTCCCAAGACTTCGATAAAGCGGGTGAACTGCGCGATCGCGAGATGGAGATCAAAACCCAGATCCGCT
CGATCGCCCAAAGCAAGAAAGCCGATGGCACCAGCAGCAGTGATGATTCGCCGATCGTCACTGAGGAAGATATCGCGCAT
ATCGTCGCCTCTTGGACCGGCGTACCAGTCAACAAGCTGACCGAGTCGGAATCAACCAAATTGCTGAACATGGAGGAGAC
CCTCCACAGCCGCTTGATTGGTCAAGACGAAGCCGTGAAAGCTGTTTCACGAGCAATCCGTCGCGCCCGAGTTGGTCTCA
AGAACCCCAACCGTCCGATTGCCAGCTTCATCTTCAGCGGCCCGACCGGTGTTGGTAAAACCGAACTGACTAAAGCTTTG
GCGGCTTACTTCTTCGGCAGCGAAGAGGCGATGATCCGCCTTGACATGTCGGAGTACATGGAGCGCCATACCGTCAGCAA
GCTGATCGGTTCGCCTCCGGGCTATGTCGGCTATAACGAAGGCGGCCAGCTGACTGAAGCGGTTCGTCGTCGTCCCTACA
CCGTGGTCTTGCTGGACGAGATCGAGAAAGCTCACCCCGATGTCTTCAACCTGCTCTTGCAGTTACTGGAAGACGGTCGC
TTGACTGATGCCAAAGGTCGGACGGTGGACTTCAAGAACACCCTGATCATCCTGACCTCCAACATTGGCTCGAAGGTGAT
CGAGAAGGGTGGCGGCGGTCTAGGCTTTGACTTCTCGGGTGAGGATGAAGCTGAGAACCAATACAACCGCATTCGCTCCT
TGGTGAACGAAGAGCTGAAGCAATACTTCCGCCCTGAGTTCCTCAACCGCTTGGACGAAATCATCGTCTTCCGTCAGCTC
AACAAAGCGGAAGTCAAAGAAATTGCCGACATTATGTTGCGCGAGGTCTTTGGCCGGATGCAGGAAAAAGGCATCACCCT
GTCGGTCACTGAGAAGTTCAAAGACCGCTTGGTGGAAGAGGGCTACAACCCCAGCTACGGGGCACGTCCGCTTCGTCGGG
CGATCATGCGCTTGCTCGAAGATTCCTTGGCTGAGGAGTTCCTGTCTGGCAAGCTCCGCGAAGGCGACACCGCCGTCGTT
GATATTGGTGAGGAAGGCAAAGTGCAAGTAATTGCACAAGAGAAACGCGAACTCCTGCCCCAAGCAGTTGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
62.192 |
98.544 |
0.613 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
44.27 |
100 |
0.445 |
| clpC | Lactococcus lactis subsp. cremoris KW2 |
55.226 |
77.791 |
0.43 |
| clpC | Streptococcus mutans UA159 |
42.036 |
100 |
0.426 |
| clpE | Streptococcus mutans UA159 |
52.941 |
80.461 |
0.426 |
| clpE | Streptococcus pneumoniae D39 |
51.335 |
81.796 |
0.42 |
| clpE | Streptococcus pneumoniae R6 |
51.335 |
81.796 |
0.42 |
| clpE | Streptococcus pneumoniae Rx1 |
51.335 |
81.796 |
0.42 |
| clpC | Streptococcus pneumoniae Rx1 |
45.276 |
92.476 |
0.419 |
| clpC | Streptococcus pneumoniae D39 |
45.276 |
92.476 |
0.419 |
| clpE | Streptococcus pneumoniae TIGR4 |
51.187 |
81.796 |
0.419 |
| clpC | Streptococcus pneumoniae TIGR4 |
45.37 |
91.748 |
0.416 |
| clpC | Streptococcus thermophilus LMD-9 |
41.255 |
100 |
0.415 |
| clpC | Streptococcus thermophilus LMG 18311 |
41.134 |
100 |
0.414 |