Detailed information NTG0846839

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: VZG47_RS06600
• Genome accession: NZ_CP144288
• Coordinates: 1314514..1315746 (-)
• Length: 410 a.a.
• NCBI ID: WP_338431709.1
• Uniprot ID: -
• Organism: Synechococcus elongatus IITB5
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1309514..1320746

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VZG47_RS06580 (VZG47_06550)	rfbC	1310610..1311161 (-)	552	WP_338431706.1	dTDP-4-dehydrorhamnose 3,5-epimerase	-
VZG47_RS06585 (VZG47_06555)	dusA	1311700..1312713 (-)	1014	WP_338431830.1	tRNA dihydrouridine(20/20a) synthase DusA	-
VZG47_RS06590 (VZG47_06560)	-	1312740..1313972 (+)	1233	WP_338431707.1	NAD(P)/FAD-dependent oxidoreductase	-
VZG47_RS06595 (VZG47_06565)	-	1313952..1314509 (-)	558	WP_338431708.1	hypothetical protein	-
VZG47_RS06600 (VZG47_06570)	pilC	1314514..1315746 (-)	1233	WP_338431709.1	type II secretion system F family protein	Machinery gene
VZG47_RS06605 (VZG47_06575)	pilT	1315771..1316859 (-)	1089	WP_338431711.1	type IV pilus twitching motility protein PilT	Machinery gene
VZG47_RS06610 (VZG47_06580)	pilB/pilB1	1316931..1318931 (-)	2001	WP_338431713.1	GspE/PulE family protein	Machinery gene
VZG47_RS06615 (VZG47_06585)	grpE	1319217..1319840 (+)	624	WP_338431715.1	nucleotide exchange factor GrpE	-

Sequence

Protein

• Length: 410 a.a.
• Molecular weight: 45111.04 Da
• Isoelectric Point: 8.7111

>NTDB_id=846839 VZG47_RS06600 WP_338431709.1 1314514..1315746(-) (pilC) [Synechococcus elongatus IITB5]
MPTYVAQVRDSRGAIRKQRIQAGNVREARVGLRQQGFLVQSIDESAGLSLAGLSSFNLEEATSKVTVKDMALFSRQLSSL
VDAGVPIVRALGLLTEQTRNPKLRKTLRQINIDVQEGLNLSDSMRKFPKVFDGLYVAMIQAGETGGVLDDVLNRLSKLLE
DMSRLRNQMKSAMTYPMAVFVIAILVFLGMTIFIIPTFAGIFEDQGAELPGFTLLLLTISEVLRTPIFWGFFLIFLFGSA
FVFKQYYSTPPGRLSVDSMILRLPILGEMIQKAATARFCRTFGSLTRAGVPIITALEIVRDTAGNQAIARSIDAAKMEVQ
TGGMMSVALSRYRIFPLMALSMITIGEETGELDTMVNKVADFYEDEVEQAVKGLTSLLEPIMIVLVGGIVGSILLAMYLP
MFSIFDQIKG

Nucleotide

• Length: 1233 bp

>NTDB_id=846839 VZG47_RS06600 WP_338431709.1 1314514..1315746(-) (pilC) [Synechococcus elongatus IITB5]
ATGCCAACATATGTAGCGCAAGTTCGTGATAGCCGAGGAGCCATCCGTAAACAGCGAATTCAAGCAGGTAATGTTCGCGA
GGCACGTGTTGGTTTGCGTCAGCAAGGGTTCTTAGTACAGTCAATTGATGAATCAGCTGGTCTCTCCCTCGCTGGCTTGA
GTAGTTTTAACCTTGAGGAAGCAACGAGCAAAGTCACTGTCAAGGACATGGCTTTGTTCTCACGTCAGCTCTCTTCCCTG
GTAGATGCAGGGGTTCCCATTGTAAGAGCCTTGGGATTACTGACAGAACAAACTCGAAATCCTAAGTTGAGAAAGACACT
CAGGCAAATCAACATTGATGTCCAAGAGGGCTTGAATCTGTCAGATTCAATGCGCAAGTTTCCGAAGGTCTTTGATGGAC
TTTACGTTGCCATGATTCAAGCGGGCGAGACTGGTGGTGTCCTAGATGATGTCCTTAACCGTCTCTCGAAACTATTAGAA
GACATGTCTAGATTACGCAACCAGATGAAGTCAGCCATGACTTACCCTATGGCTGTCTTTGTAATTGCGATTCTCGTCTT
TCTGGGAATGACAATTTTTATCATTCCGACTTTTGCAGGCATTTTTGAAGATCAAGGTGCTGAATTACCTGGCTTTACAC
TTCTTTTGTTAACAATTAGTGAAGTTTTGAGGACACCTATTTTTTGGGGGTTCTTTTTGATTTTTCTTTTTGGTTCTGCT
TTCGTTTTTAAGCAATATTACTCAACGCCACCTGGACGACTCAGTGTTGACAGCATGATTTTGCGCTTGCCAATTCTTGG
AGAAATGATTCAGAAAGCAGCGACAGCTCGATTCTGCCGAACTTTTGGCTCGCTGACACGTGCAGGTGTTCCGATCATTA
CTGCCTTGGAGATTGTGCGCGACACTGCAGGGAATCAGGCGATTGCCCGTTCAATTGATGCTGCCAAAATGGAAGTCCAA
ACCGGTGGCATGATGAGCGTTGCTTTATCCCGATATCGCATTTTCCCTCTCATGGCTCTCAGCATGATTACGATTGGAGA
AGAGACTGGTGAACTTGACACTATGGTGAATAAAGTTGCCGATTTCTATGAAGATGAAGTTGAGCAAGCTGTTAAAGGAC
TGACGAGTTTGCTAGAGCCAATTATGATTGTCTTAGTCGGTGGCATCGTCGGCTCTATTCTGTTAGCCATGTATCTGCCA
ATGTTTAGCATTTTCGATCAGATCAAAGGGTAA

Domains

Predicted by InterProScan.

• Type II secretion system (T2SS), protein F (T2SSF) (73-196)

• Type II secretion system (T2SS), protein F (T2SSF) (278-400)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Thermus thermophilus HB27	41.728	98.78	0.412