Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | VZG47_RS05585 | Genome accession | NZ_CP144288 |
| Coordinates | 1097941..1100568 (-) | Length | 875 a.a. |
| NCBI ID | WP_338431491.1 | Uniprot ID | - |
| Organism | Synechococcus elongatus IITB5 | ||
| Function | degradation of ComK; degradation of DegU (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1092941..1105568
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VZG47_RS05555 (VZG47_05525) | ndhI | 1093589..1094197 (+) | 609 | WP_338431485.1 | NAD(P)H-quinone oxidoreductase subunit I | - |
| VZG47_RS05560 (VZG47_05530) | - | 1094201..1094806 (+) | 606 | WP_338431487.1 | NADH-quinone oxidoreductase subunit J | - |
| VZG47_RS05565 (VZG47_05535) | nuoK | 1094825..1095136 (+) | 312 | WP_208679010.1 | NADH-quinone oxidoreductase subunit NuoK | - |
| VZG47_RS05570 (VZG47_05540) | - | 1095360..1096997 (+) | 1638 | WP_338431488.1 | iron uptake porin | - |
| VZG47_RS05575 (VZG47_05545) | - | 1097129..1097266 (+) | 138 | WP_338431489.1 | YHYH domain-containing protein | - |
| VZG47_RS05580 (VZG47_05550) | - | 1097309..1097803 (+) | 495 | WP_338431490.1 | hypothetical protein | - |
| VZG47_RS05585 (VZG47_05555) | clpC | 1097941..1100568 (-) | 2628 | WP_338431491.1 | ATP-dependent chaperone ClpB | Regulator |
| VZG47_RS05590 (VZG47_05560) | petE | 1100739..1101116 (-) | 378 | WP_208676678.1 | plastocyanin | - |
| VZG47_RS05595 (VZG47_05565) | - | 1101164..1102120 (-) | 957 | WP_338431492.1 | NAD(P)-dependent oxidoreductase | - |
| VZG47_RS05600 (VZG47_05570) | hemE | 1102142..1103206 (-) | 1065 | WP_208679007.1 | uroporphyrinogen decarboxylase | - |
Sequence
Protein
Download Length: 875 a.a. Molecular weight: 98810.52 Da Isoelectric Point: 5.0893
>NTDB_id=846835 VZG47_RS05585 WP_338431491.1 1097941..1100568(-) (clpC) [Synechococcus elongatus IITB5]
MQPTDPNRFTEKAWEAIVRTTDVAKQAQHQQIETEHLFLALLQEPGLALNILKKAGLETSRLQQFTEQFIARQPKVSGVN
QSVYLGRSLDQLLDQAEQFRKDFDDEFISIEHLILSFPRDSRFGRSLSQEFKVDEKQLRQVIQQIRGSQKVTDQNPEGKY
EALEKYGRDLTEMARLGKLDPVIGRDDEIRRTVQILSRRTKNNPVLIGEPGVGKTAIAEGLAQRIINGDVPQSLKDRRLI
ALDMGALIAGAKFRGEFEERLKAVLKEVTDSEGIIILFIDEIHTVVGAGATQGSMDAGNLLKPMLARGELRCIGATTLDE
YRQYIEKDAALERRFQQVFVDQPSVEDTISILRGLKERYEVHHGVRISDNALVAAAVLSTRYISDRFLPDKAIDLVDESA
ARLKMEITSKPEELDEIDRKILQLEMERLSLRKESDTASQERLQRLEKELANLKEDQRSLSSQWKAEKDVLEDIKSVREE
IDQVNLKIQQAERDYDLNKAAELKYGKLTELQRKLAEMEHGLAATQTGGKSLLREEVTEVDIAEIISKWTGIPVSKLVES
EMQKLLNLDSELHQRVIGQDEAVSAVADAIQRSRAGLSDPKRPIASFIFLGPTGVGKTELAKALAAYLFDTEDAMIRIDM
SEYMEKHAVSRLIGAPPGYVGYDEGGQLTEAVRRRPYSVILFDEIEKAHPDVFNVMLQILDDGRVTDSRGRTVDFKNTIL
ILTSNIGSQFILDVAGDDSRYEEMRSRVTDALRANFRPEFLNRVDETIIFHSLRKDQLQQIVRIQLQRLEERLSDRKLAL
SMTPEAVDFLVDVGFDPVYGARPLKRVIQRELETAIAKAILRGEFRDGDTIQVAVENGRLIFQSIAAPAATTTIS
MQPTDPNRFTEKAWEAIVRTTDVAKQAQHQQIETEHLFLALLQEPGLALNILKKAGLETSRLQQFTEQFIARQPKVSGVN
QSVYLGRSLDQLLDQAEQFRKDFDDEFISIEHLILSFPRDSRFGRSLSQEFKVDEKQLRQVIQQIRGSQKVTDQNPEGKY
EALEKYGRDLTEMARLGKLDPVIGRDDEIRRTVQILSRRTKNNPVLIGEPGVGKTAIAEGLAQRIINGDVPQSLKDRRLI
ALDMGALIAGAKFRGEFEERLKAVLKEVTDSEGIIILFIDEIHTVVGAGATQGSMDAGNLLKPMLARGELRCIGATTLDE
YRQYIEKDAALERRFQQVFVDQPSVEDTISILRGLKERYEVHHGVRISDNALVAAAVLSTRYISDRFLPDKAIDLVDESA
ARLKMEITSKPEELDEIDRKILQLEMERLSLRKESDTASQERLQRLEKELANLKEDQRSLSSQWKAEKDVLEDIKSVREE
IDQVNLKIQQAERDYDLNKAAELKYGKLTELQRKLAEMEHGLAATQTGGKSLLREEVTEVDIAEIISKWTGIPVSKLVES
EMQKLLNLDSELHQRVIGQDEAVSAVADAIQRSRAGLSDPKRPIASFIFLGPTGVGKTELAKALAAYLFDTEDAMIRIDM
SEYMEKHAVSRLIGAPPGYVGYDEGGQLTEAVRRRPYSVILFDEIEKAHPDVFNVMLQILDDGRVTDSRGRTVDFKNTIL
ILTSNIGSQFILDVAGDDSRYEEMRSRVTDALRANFRPEFLNRVDETIIFHSLRKDQLQQIVRIQLQRLEERLSDRKLAL
SMTPEAVDFLVDVGFDPVYGARPLKRVIQRELETAIAKAILRGEFRDGDTIQVAVENGRLIFQSIAAPAATTTIS
Nucleotide
Download Length: 2628 bp
>NTDB_id=846835 VZG47_RS05585 WP_338431491.1 1097941..1100568(-) (clpC) [Synechococcus elongatus IITB5]
ATGCAACCGACAGATCCCAATCGATTTACTGAAAAAGCCTGGGAAGCGATCGTTCGTACTACGGATGTTGCGAAACAAGC
TCAGCATCAGCAAATTGAAACTGAACACTTGTTTCTAGCGCTGTTGCAAGAGCCAGGTTTAGCGCTCAATATCCTCAAAA
AAGCAGGCTTAGAAACCAGTCGCTTGCAGCAATTTACTGAGCAGTTCATAGCACGTCAGCCCAAGGTCAGTGGAGTTAAT
CAATCAGTTTATTTGGGGCGATCGCTCGATCAGTTACTGGATCAAGCAGAACAATTTCGTAAGGATTTTGATGATGAGTT
CATCTCCATTGAGCACCTGATCCTGAGTTTCCCCCGTGACTCTCGTTTTGGGCGATCGCTCAGTCAAGAGTTTAAGGTTG
ATGAAAAGCAACTCCGTCAGGTTATTCAACAGATTCGAGGCAGCCAAAAAGTGACTGATCAAAATCCCGAAGGTAAATAC
GAAGCCCTCGAAAAATATGGGCGTGACCTCACCGAAATGGCTCGCCTTGGGAAGTTGGATCCGGTGATTGGTCGCGATGA
TGAAATTCGACGTACTGTTCAAATTCTCAGTCGACGCACCAAAAATAATCCGGTTTTGATTGGTGAGCCAGGTGTTGGGA
AAACGGCGATTGCAGAGGGCCTTGCTCAGCGGATTATCAATGGTGATGTGCCCCAGTCACTGAAGGATCGACGCCTGATT
GCATTGGATATGGGCGCTTTAATCGCTGGTGCTAAATTCCGTGGTGAATTTGAAGAACGCCTGAAAGCAGTTCTGAAAGA
AGTCACTGATTCTGAAGGCATTATCATCCTTTTTATTGATGAAATTCACACGGTTGTCGGTGCTGGGGCAACCCAAGGCT
CGATGGATGCTGGCAACTTGCTGAAGCCAATGTTGGCTCGCGGTGAGCTGCGTTGTATTGGAGCAACGACGCTCGATGAA
TATCGCCAGTACATTGAAAAGGATGCGGCACTGGAGCGACGCTTCCAACAGGTTTTTGTCGATCAACCCTCGGTTGAAGA
CACAATCTCTATTCTCCGAGGCTTGAAAGAACGCTATGAAGTTCACCATGGCGTTCGTATTTCCGACAATGCATTGGTTG
CAGCAGCTGTGCTTTCAACCCGCTACATTAGCGATCGCTTCCTACCAGATAAAGCGATCGACTTGGTTGATGAATCTGCA
GCGCGCCTCAAAATGGAGATCACTTCAAAACCTGAGGAGCTGGATGAAATCGATCGCAAAATTCTCCAGTTAGAAATGGA
GCGACTCTCTCTGCGTAAAGAGAGCGATACCGCTTCACAGGAGCGACTGCAACGGCTCGAAAAAGAACTGGCAAATCTTA
AAGAAGACCAGCGCAGTTTAAGCAGTCAATGGAAAGCTGAAAAAGATGTCCTCGAAGATATTAAGTCTGTCCGTGAGGAG
ATTGATCAGGTCAACCTCAAAATCCAGCAGGCTGAGCGAGATTATGATCTGAACAAAGCTGCTGAACTGAAATATGGCAA
GCTAACTGAGCTGCAGCGGAAACTTGCAGAAATGGAGCATGGTTTGGCTGCAACGCAAACTGGCGGTAAGTCTCTGTTGC
GAGAAGAAGTGACCGAGGTTGATATCGCTGAAATCATCTCGAAATGGACCGGAATTCCGGTCAGTAAGCTTGTTGAGTCA
GAAATGCAAAAGCTACTCAACTTGGATAGTGAGCTGCATCAGCGGGTCATTGGTCAAGATGAGGCCGTTTCTGCAGTTGC
CGATGCAATTCAGCGATCGCGAGCTGGCTTATCTGATCCGAAACGACCGATCGCGAGTTTCATTTTCCTTGGCCCAACTG
GAGTTGGTAAAACTGAGCTTGCCAAAGCCCTAGCCGCTTATCTGTTTGATACGGAAGATGCGATGATTCGCATCGACATG
TCGGAATATATGGAGAAACATGCGGTCTCGCGGCTAATTGGTGCACCTCCTGGCTATGTTGGCTATGACGAAGGCGGTCA
ACTGACCGAAGCGGTGCGGCGACGTCCTTATTCCGTCATCTTGTTTGATGAGATCGAGAAAGCACATCCTGATGTCTTTA
ACGTCATGTTGCAGATTCTCGATGATGGCCGGGTAACGGATAGTCGAGGTCGGACAGTTGACTTCAAGAATACAATCTTG
ATTCTGACCAGCAATATTGGCTCACAATTCATCCTGGATGTTGCAGGAGATGATAGCCGCTACGAAGAAATGCGGAGTCG
TGTCACCGATGCGTTGCGCGCTAATTTCCGGCCGGAATTCCTCAACCGTGTGGATGAAACAATCATCTTCCACAGTCTGC
GGAAGGATCAGCTTCAGCAAATTGTTCGCATTCAACTCCAGCGTCTTGAAGAGCGGCTGAGCGATCGCAAGCTAGCGTTG
TCGATGACTCCTGAAGCGGTCGATTTCCTAGTAGATGTTGGTTTCGATCCGGTCTATGGGGCGCGCCCTCTCAAACGGGT
CATCCAGCGAGAACTCGAAACCGCGATCGCCAAAGCCATCCTTCGCGGTGAGTTTCGTGATGGCGATACCATCCAAGTTG
CGGTTGAAAATGGGCGGCTTATCTTCCAATCGATCGCCGCCCCAGCAGCAACAACGACGATTAGTTAG
ATGCAACCGACAGATCCCAATCGATTTACTGAAAAAGCCTGGGAAGCGATCGTTCGTACTACGGATGTTGCGAAACAAGC
TCAGCATCAGCAAATTGAAACTGAACACTTGTTTCTAGCGCTGTTGCAAGAGCCAGGTTTAGCGCTCAATATCCTCAAAA
AAGCAGGCTTAGAAACCAGTCGCTTGCAGCAATTTACTGAGCAGTTCATAGCACGTCAGCCCAAGGTCAGTGGAGTTAAT
CAATCAGTTTATTTGGGGCGATCGCTCGATCAGTTACTGGATCAAGCAGAACAATTTCGTAAGGATTTTGATGATGAGTT
CATCTCCATTGAGCACCTGATCCTGAGTTTCCCCCGTGACTCTCGTTTTGGGCGATCGCTCAGTCAAGAGTTTAAGGTTG
ATGAAAAGCAACTCCGTCAGGTTATTCAACAGATTCGAGGCAGCCAAAAAGTGACTGATCAAAATCCCGAAGGTAAATAC
GAAGCCCTCGAAAAATATGGGCGTGACCTCACCGAAATGGCTCGCCTTGGGAAGTTGGATCCGGTGATTGGTCGCGATGA
TGAAATTCGACGTACTGTTCAAATTCTCAGTCGACGCACCAAAAATAATCCGGTTTTGATTGGTGAGCCAGGTGTTGGGA
AAACGGCGATTGCAGAGGGCCTTGCTCAGCGGATTATCAATGGTGATGTGCCCCAGTCACTGAAGGATCGACGCCTGATT
GCATTGGATATGGGCGCTTTAATCGCTGGTGCTAAATTCCGTGGTGAATTTGAAGAACGCCTGAAAGCAGTTCTGAAAGA
AGTCACTGATTCTGAAGGCATTATCATCCTTTTTATTGATGAAATTCACACGGTTGTCGGTGCTGGGGCAACCCAAGGCT
CGATGGATGCTGGCAACTTGCTGAAGCCAATGTTGGCTCGCGGTGAGCTGCGTTGTATTGGAGCAACGACGCTCGATGAA
TATCGCCAGTACATTGAAAAGGATGCGGCACTGGAGCGACGCTTCCAACAGGTTTTTGTCGATCAACCCTCGGTTGAAGA
CACAATCTCTATTCTCCGAGGCTTGAAAGAACGCTATGAAGTTCACCATGGCGTTCGTATTTCCGACAATGCATTGGTTG
CAGCAGCTGTGCTTTCAACCCGCTACATTAGCGATCGCTTCCTACCAGATAAAGCGATCGACTTGGTTGATGAATCTGCA
GCGCGCCTCAAAATGGAGATCACTTCAAAACCTGAGGAGCTGGATGAAATCGATCGCAAAATTCTCCAGTTAGAAATGGA
GCGACTCTCTCTGCGTAAAGAGAGCGATACCGCTTCACAGGAGCGACTGCAACGGCTCGAAAAAGAACTGGCAAATCTTA
AAGAAGACCAGCGCAGTTTAAGCAGTCAATGGAAAGCTGAAAAAGATGTCCTCGAAGATATTAAGTCTGTCCGTGAGGAG
ATTGATCAGGTCAACCTCAAAATCCAGCAGGCTGAGCGAGATTATGATCTGAACAAAGCTGCTGAACTGAAATATGGCAA
GCTAACTGAGCTGCAGCGGAAACTTGCAGAAATGGAGCATGGTTTGGCTGCAACGCAAACTGGCGGTAAGTCTCTGTTGC
GAGAAGAAGTGACCGAGGTTGATATCGCTGAAATCATCTCGAAATGGACCGGAATTCCGGTCAGTAAGCTTGTTGAGTCA
GAAATGCAAAAGCTACTCAACTTGGATAGTGAGCTGCATCAGCGGGTCATTGGTCAAGATGAGGCCGTTTCTGCAGTTGC
CGATGCAATTCAGCGATCGCGAGCTGGCTTATCTGATCCGAAACGACCGATCGCGAGTTTCATTTTCCTTGGCCCAACTG
GAGTTGGTAAAACTGAGCTTGCCAAAGCCCTAGCCGCTTATCTGTTTGATACGGAAGATGCGATGATTCGCATCGACATG
TCGGAATATATGGAGAAACATGCGGTCTCGCGGCTAATTGGTGCACCTCCTGGCTATGTTGGCTATGACGAAGGCGGTCA
ACTGACCGAAGCGGTGCGGCGACGTCCTTATTCCGTCATCTTGTTTGATGAGATCGAGAAAGCACATCCTGATGTCTTTA
ACGTCATGTTGCAGATTCTCGATGATGGCCGGGTAACGGATAGTCGAGGTCGGACAGTTGACTTCAAGAATACAATCTTG
ATTCTGACCAGCAATATTGGCTCACAATTCATCCTGGATGTTGCAGGAGATGATAGCCGCTACGAAGAAATGCGGAGTCG
TGTCACCGATGCGTTGCGCGCTAATTTCCGGCCGGAATTCCTCAACCGTGTGGATGAAACAATCATCTTCCACAGTCTGC
GGAAGGATCAGCTTCAGCAAATTGTTCGCATTCAACTCCAGCGTCTTGAAGAGCGGCTGAGCGATCGCAAGCTAGCGTTG
TCGATGACTCCTGAAGCGGTCGATTTCCTAGTAGATGTTGGTTTCGATCCGGTCTATGGGGCGCGCCCTCTCAAACGGGT
CATCCAGCGAGAACTCGAAACCGCGATCGCCAAAGCCATCCTTCGCGGTGAGTTTCGTGATGGCGATACCATCCAAGTTG
CGGTTGAAAATGGGCGGCTTATCTTCCAATCGATCGCCGCCCCAGCAGCAACAACGACGATTAGTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
47.018 |
99.657 |
0.469 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
43.068 |
100 |
0.433 |
| clpE | Streptococcus pneumoniae TIGR4 |
49.12 |
77.943 |
0.383 |
| clpE | Streptococcus pneumoniae Rx1 |
48.755 |
78.057 |
0.381 |
| clpE | Streptococcus pneumoniae D39 |
48.755 |
78.057 |
0.381 |
| clpE | Streptococcus pneumoniae R6 |
48.755 |
78.057 |
0.381 |