Detailed information NTG0846824

Bioinformatically predicted

Overview

• Name: pilL-C
• Type: Machinery gene
• Locus tag: VZG47_RS01940
• Genome accession: NZ_CP144288
• Coordinates: 350866..353640 (-)
• Length: 924 a.a.
• NCBI ID: WP_338430645.1
• Uniprot ID: -
• Organism: Synechococcus elongatus IITB5
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 345866..358640

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VZG47_RS01920 (VZG47_01910)	rodA	346450..347715 (-)	1266	WP_338430641.1	rod shape-determining protein RodA	-
VZG47_RS01925 (VZG47_01915)	-	347765..348832 (-)	1068	WP_338430643.1	Mrp/NBP35 family ATP-binding protein	-
VZG47_RS01930 (VZG47_01920)	-	348963..350339 (-)	1377	WP_338430644.1	glycosyltransferase family 2 protein	-
VZG47_RS01935 (VZG47_01925)	-	350626..350862 (-)	237	WP_208677661.1	hypothetical protein	-
VZG47_RS01940 (VZG47_01930)	pilL-C	350866..353640 (-)	2775	WP_338430645.1	hybrid sensor histidine kinase/response regulator	Machinery gene
VZG47_RS01945 (VZG47_01935)	-	353643..356144 (-)	2502	WP_338430647.1	methyl-accepting chemotaxis protein	-
VZG47_RS01950 (VZG47_01940)	-	356173..356655 (-)	483	WP_208672876.1	chemotaxis protein CheW	-
VZG47_RS01955 (VZG47_01945)	-	356903..357664 (-)	762	WP_338430649.1	YebC/PmpR family DNA-binding transcriptional regulator	-
VZG47_RS01960 (VZG47_01950)	-	357785..358399 (+)	615	WP_338430651.1	hypothetical protein	-

Sequence

Protein

• Length: 924 a.a.
• Molecular weight: 102403.27 Da
• Isoelectric Point: 4.3848

>NTDB_id=846824 VZG47_RS01940 WP_338430645.1 350866..353640(-) (pilL-C) [Synechococcus elongatus IITB5]
MSPTSDNVLRSLFLRETRENLQLLSNTLSQLEAGLPEATTLADASRAAHSLKGAAALLKFETFRQLAAGLESCLSLLAEA
ELPDYAASLPLFQQTTTLLVTATDRIEADADDLGLLPDEGQHLVEQLTRLQGTLETALHTPVDQQEVVENTLEDLLSQDF
EPVLPPADPSLDETLDALLGDLEELGKPADSDGDRPPLEELNFDLEDWIEASEEASQAAEVDVAAQLKVLEAAIADLTQQ
SQEQPLTLGIDPAILSAVIQAPPRLPVTLTLEPVAKARSQDRGPVAFEQTLRVPVRQLDNLSNLVGEIVVSRNTLESDQS
HLRETLENLMLQVHQLGDLGERMRELYERSLLETALAARRQLVGAPSAAATSNLSTFPTDQFDDLELDRFSGFHSISQEM
MELLVRLREAASDIDFMVNEPFDQLTRNFQQITLQLQSELNQTRMVPFSDLTDQLPRAVREISRRCGKGAHLEIEGQDIL
IDKMILQKLQAPMTHLINNALSHGIETAEVRQYRNKSPEGTLVVRASLQGNRTLITVSDDGAGIDAEQVKIKALSRGLIT
PEEAAGMRVREIYELLFRPGFSTRDQADELAGRGVGLDVVRRALHEIQGEIVVDSELGKGTTFTFRLPLTLSITKALTCL
HERARLAFPMDSVEEMLDIPQQRLSMGPQGQLSLDWHNQSLPVFPLSSLLNFYLPFGRTRYYNNLGDDGVVSIVILRNDN
EYLAVQTDQIEGEREIVIKQIEGPIAKPLGILGVTVRSDGQVMPIVDVLELFDIAYGRVRQRQTAPTPPSSDELNTATEP
MVLIVDDSITVRELLSMTFKKAGYIVEQARNGQEALEKLYSGLPCDLVFCDIEMPKMNGLELLERLQADPKLRRLPVAML
TSRGADRHRQIAAHLGARAYFSKPYLEEQLLEASARLRNGERLI

Nucleotide

• Length: 2775 bp

>NTDB_id=846824 VZG47_RS01940 WP_338430645.1 350866..353640(-) (pilL-C) [Synechococcus elongatus IITB5]
ATGTCACCCACCAGTGATAATGTCCTGCGATCGCTGTTTCTCCGAGAAACGCGGGAGAATTTACAGCTTCTCAGCAACAC
CCTCAGCCAGCTCGAAGCAGGCCTCCCAGAAGCGACCACGTTGGCGGACGCATCGCGGGCGGCTCACTCGCTCAAGGGTG
CAGCGGCTTTGCTTAAGTTCGAAACTTTCCGGCAGCTCGCAGCAGGTCTGGAATCTTGTCTATCGCTTCTCGCCGAGGCA
GAGCTACCGGACTACGCTGCCAGTCTGCCTCTGTTTCAGCAGACAACGACCCTGCTCGTGACCGCGACTGATCGGATCGA
GGCGGACGCTGATGATCTCGGCTTGCTGCCTGATGAAGGGCAGCACTTGGTCGAACAGTTGACCCGTCTGCAAGGAACGC
TGGAAACCGCTCTTCACACGCCTGTCGATCAGCAGGAAGTGGTTGAAAACACCCTTGAAGATTTACTCAGTCAAGACTTT
GAGCCTGTCTTGCCACCTGCCGATCCCAGTTTGGATGAGACGCTGGATGCCTTGCTCGGCGATCTCGAAGAACTCGGGAA
GCCTGCTGACTCCGACGGCGATCGCCCACCGCTGGAAGAACTTAACTTTGACCTTGAAGACTGGATTGAGGCCAGTGAAG
AAGCATCGCAGGCAGCTGAAGTAGACGTTGCCGCCCAGCTCAAAGTTCTAGAAGCCGCGATCGCCGATCTGACACAACAG
TCCCAAGAGCAACCCCTGACGCTGGGGATCGATCCCGCCATCTTGAGTGCTGTCATTCAAGCCCCACCACGGCTACCTGT
GACGTTGACCCTAGAGCCCGTCGCCAAAGCCCGCAGCCAGGATCGAGGCCCTGTGGCCTTCGAGCAGACGTTGCGGGTCC
CCGTACGGCAATTGGATAACCTCAGTAACCTGGTTGGGGAAATCGTTGTCAGCCGGAATACCCTCGAAAGCGATCAATCC
CACCTGCGGGAAACCCTCGAGAACCTGATGCTGCAGGTGCATCAGCTAGGGGATCTGGGTGAGCGGATGCGGGAACTGTA
CGAGCGATCGCTGCTGGAAACCGCACTGGCGGCTCGCCGGCAACTGGTCGGAGCCCCTAGCGCCGCCGCAACGAGTAATC
TTTCCACCTTCCCCACTGATCAGTTCGACGATCTAGAACTCGATCGCTTCAGTGGTTTCCACTCCATCTCCCAAGAAATG
ATGGAGTTGCTGGTGCGGTTGCGCGAGGCGGCCTCAGACATTGACTTCATGGTCAATGAACCGTTTGACCAACTGACCCG
CAACTTTCAGCAAATTACCCTGCAACTGCAGAGCGAGCTGAACCAGACGCGCATGGTCCCCTTCTCGGACCTCACCGACC
AGCTCCCGCGTGCCGTTCGGGAGATTTCGCGCCGCTGCGGTAAAGGGGCTCACCTCGAGATTGAGGGGCAAGACATCTTG
ATCGACAAGATGATCCTGCAAAAACTGCAGGCGCCCATGACCCACTTGATTAACAACGCCCTCAGTCATGGCATTGAAAC
TGCAGAAGTGCGGCAATACCGCAATAAATCCCCGGAGGGAACGCTGGTAGTTCGGGCTTCGCTGCAGGGCAACCGGACCC
TGATTACCGTCAGTGACGACGGGGCAGGCATTGATGCGGAGCAGGTGAAAATCAAAGCTCTCTCACGGGGTCTGATTACC
CCAGAAGAAGCCGCAGGCATGCGCGTGCGGGAGATTTACGAACTCCTGTTCCGGCCGGGCTTTAGTACCCGCGACCAAGC
TGATGAGCTCGCTGGACGTGGGGTTGGCTTGGATGTAGTGCGGCGAGCGCTGCATGAAATTCAAGGCGAGATTGTGGTCG
ATTCGGAGCTGGGTAAAGGAACGACTTTTACTTTCCGACTACCCCTGACGCTCTCGATTACCAAAGCCTTGACCTGTCTA
CACGAGCGGGCACGGCTGGCCTTCCCAATGGACAGCGTCGAGGAGATGCTCGACATTCCTCAGCAACGCCTCTCGATGGG
GCCGCAAGGTCAACTGTCGTTGGACTGGCACAATCAATCGCTGCCAGTATTTCCGCTCTCATCGCTGCTGAATTTCTACC
TGCCATTCGGGCGCACCCGCTACTACAACAATCTGGGTGATGACGGCGTGGTGTCGATTGTCATCCTGCGCAATGACAAC
GAGTACCTCGCCGTTCAGACCGATCAGATTGAGGGCGAGCGTGAAATTGTGATCAAGCAGATCGAAGGTCCGATCGCTAA
ACCCCTCGGTATTCTGGGGGTCACGGTTCGCTCCGACGGTCAGGTGATGCCAATTGTCGACGTCTTGGAACTGTTTGACA
TCGCCTACGGACGGGTGCGGCAGCGCCAGACGGCTCCAACGCCACCCAGCTCTGATGAACTCAACACCGCGACCGAACCC
ATGGTGCTGATTGTCGATGACTCGATCACCGTCCGTGAACTGCTGTCGATGACCTTCAAGAAGGCAGGCTACATCGTCGA
GCAGGCGCGCAATGGTCAAGAGGCCCTTGAAAAACTCTATTCGGGACTGCCCTGCGATCTGGTCTTCTGCGATATCGAGA
TGCCGAAGATGAATGGCCTAGAGCTCTTAGAGCGCCTGCAGGCGGATCCCAAACTGCGGCGGTTACCGGTGGCTATGCTG
ACATCGCGAGGTGCCGATCGCCATCGACAGATCGCGGCTCACTTGGGGGCACGGGCCTACTTCTCCAAGCCCTACCTCGA
GGAGCAACTGTTGGAGGCATCAGCACGCCTGAGAAACGGCGAACGGCTGATTTAG

Domains

Predicted by InterProScan.

• Hpt domain (Hpt) (9-95)

• CheW-like domain (CheW) (637-773)

• Signal transducing histidine kinase, homodimeric domain (H-kinase_dim) (289-359)

• Response regulator receiver domain (Response_reg) (802-913)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (492-630)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilL-C	Synechocystis sp. PCC 6803	56.098	70.996	0.398