Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   V3I11_RS09190 Genome accession   NZ_CP144280
Coordinates   1826590..1827243 (+) Length   217 a.a.
NCBI ID   WP_005692773.1    Uniprot ID   -
Organism   Haemophilus influenzae strain P3_EMO     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1821590..1832243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V3I11_RS09165 (V3I11_09165) - 1822008..1823012 (-) 1005 WP_005651072.1 ornithine carbamoyltransferase -
  V3I11_RS09170 (V3I11_09170) - 1823415..1824233 (+) 819 WP_005665583.1 Cof-type HAD-IIB family hydrolase -
  V3I11_RS09175 (V3I11_09175) crcB 1824233..1824619 (+) 387 WP_005665585.1 fluoride efflux transporter CrcB -
  V3I11_RS09180 (V3I11_09180) recX 1824616..1825074 (-) 459 WP_042594010.1 recombination regulator RecX -
  V3I11_RS09185 (V3I11_09185) recA 1825154..1826218 (-) 1065 WP_005654959.1 recombinase RecA Machinery gene
  V3I11_RS09190 (V3I11_09190) sxy/tfoX 1826590..1827243 (+) 654 WP_005692773.1 DNA transformation protein TfoX Regulator

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25029.43 Da        Isoelectric Point: 10.1071

>NTDB_id=846815 V3I11_RS09190 WP_005692773.1 1826590..1827243(+) (sxy/tfoX) [Haemophilus influenzae strain P3_EMO]
MNIKDEHIDSVCSLLDQLVGNVSFKNLFTGYGLFHKEETMFAIWQNKKLYLRGEGVLAIQLTKLGCEPFTTNELNKRFVL
SQYYALSDQILRSNRLCRKLIILSIKQILERKLECTLRKLNRLKDLPNLTIKHERALIKVGITNVAMLREIGAENALVEL
KKSGSGATLDFYWKLVCALQNKNSQMLSQAEKERLLKKLNEVLRKNGLKGYRKLDDE

Nucleotide


Download         Length: 654 bp        

>NTDB_id=846815 V3I11_RS09190 WP_005692773.1 1826590..1827243(+) (sxy/tfoX) [Haemophilus influenzae strain P3_EMO]
ATGAATATAAAGGATGAGCATATAGATAGCGTTTGCTCCTTGTTAGATCAGTTAGTAGGAAATGTTTCCTTTAAAAATCT
TTTTACTGGTTACGGTTTGTTTCACAAGGAAGAGACAATGTTTGCTATTTGGCAAAATAAAAAACTTTATTTACGCGGTG
AGGGTGTTCTCGCAATTCAATTAACTAAATTAGGTTGTGAACCTTTTACAACGAATGAATTGAATAAACGGTTTGTGCTT
TCACAATATTATGCACTTTCTGATCAGATTTTACGTAGTAATAGATTGTGTAGAAAATTGATTATTCTTTCTATTAAGCA
GATTCTTGAGCGGAAGCTAGAATGTACGTTAAGAAAATTGAATCGATTAAAGGATTTACCCAATTTAACGATTAAACATG
AAAGAGCTTTAATAAAAGTTGGTATTACAAATGTTGCGATGCTAAGAGAGATTGGCGCAGAAAATGCATTGGTGGAATTA
AAGAAAAGTGGCAGTGGTGCTACGCTTGATTTTTATTGGAAATTAGTATGTGCTTTGCAAAATAAAAATAGTCAGATGTT
AAGTCAAGCTGAAAAAGAGCGTTTATTGAAGAAATTAAACGAAGTTTTGAGAAAAAATGGCTTAAAAGGCTATAGAAAAT
TAGATGATGAATAA

Domains

Predicted by InterProScan.

TfoX C-terminal domain (TfoX_C)

(121-198)

TfoX N-terminal domain (TfoX_N)

(14-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Haemophilus influenzae Rd KW20

99.078

100

0.991