Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   K5605_RS10545 Genome accession   NZ_AP024313
Coordinates   2125006..2125722 (+) Length   238 a.a.
NCBI ID   WP_000688492.1    Uniprot ID   A0A7U7IEW1
Organism   Staphylococcus aureus strain N1195     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2120006..2130722
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5605_RS10515 (N1195TP_19910) - 2120273..2120899 (+) 627 WP_000522384.1 nitroreductase family protein -
  K5605_RS10520 (N1195TP_19920) - 2121207..2121992 (+) 786 WP_000867947.1 carbon-nitrogen family hydrolase -
  K5605_RS14320 hld 2122594..2122674 (-) 81 WP_000046022.1 delta-hemolysin -
  K5605_RS10530 (N1195TP_19940) agrB 2122964..2123533 (+) 570 WP_001105708.1 accessory gene regulator AgrB -
  K5605_RS10535 (N1195TP_19950) agrD 2123530..2123670 (+) 141 WP_001093929.1 cyclic lactone autoinducer peptide AgrD -
  K5605_RS10540 (N1195TP_19960) agrC 2123695..2124987 (+) 1293 WP_001825886.1 quorum-sensing sensor histidine kinase AgrC -
  K5605_RS10545 (N1195TP_19970) agrA 2125006..2125722 (+) 717 WP_000688492.1 quorum-sensing response regulator AgrA Regulator
  K5605_RS10550 (N1195TP_19980) - 2126096..2127055 (-) 960 WP_001253294.1 carbohydrate kinase -
  K5605_RS10555 (N1195TP_19990) - 2127052..2128536 (-) 1485 WP_103146212.1 sucrose-6-phosphate hydrolase -
  K5605_RS10560 (N1195TP_20000) - 2128685..2129635 (-) 951 WP_000790325.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27905.90 Da        Isoelectric Point: 6.0927

>NTDB_id=84681 K5605_RS10545 WP_000688492.1 2125006..2125722(+) (agrA) [Staphylococcus aureus strain N1195]
MKIFICEDDPKQRENMVTIIKNYIMIEEKPMEIALATDNPYEVLEQAKNMNDIGCYFLDIQLSTDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPAELRTRIIDCLETAHTRLQLLSKDNSVETIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVVNRHNIESIDSKERIVYFKNKEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=84681 K5605_RS10545 WP_000688492.1 2125006..2125722(+) (agrA) [Staphylococcus aureus strain N1195]
ATGAAAATTTTCATTTGCGAAGACGATCCAAAACAAAGAGAAAACATGGTTACCATTATTAAAAATTATATAATGATAGA
AGAAAAGCCTATGGAAATTGCCCTCGCAACTGATAATCCTTATGAGGTGCTTGAGCAAGCTAAAAATATGAATGACATAG
GCTGTTACTTTTTAGATATTCAACTTTCAACTGATATTAATGGTATCAAATTAGGCAGTGAAATTCGTAAGCATGACCCA
GTTGGTAACATTATTTTCGTTACGAGTCACAGTGAACTTACGTATTTAACATTTGTCTACAAAGTTGCAGCGATGGATTT
TATTTTTAAAGATGATCCAGCAGAATTAAGAACTCGAATTATAGATTGTTTAGAAACTGCACATACACGCTTACAATTAT
TATCAAAAGATAATAGCGTTGAAACGATTGAGTTAAAACGTGGCAGTAATTCAGTGTATGTTCAATATGATGATATTATG
TTTTTTGAATCATCAACAAAATCTCACAGACTCATTGCCCATTTAGATAACCGTCAAATTGAATTTTATGGTAATTTAAA
AGAACTGAGTCAATTAGATGATCGTTTCTTCAGATGTCATAATAGCTTTGTCGTCAATCGTCATAATATCGAATCTATTG
ATTCGAAAGAGCGTATTGTTTATTTTAAAAATAAAGAACACTGCTATGCATCGGTGAGAAACGTTAAAAAAATATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7IEW1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

100

100

1

Multiple sequence alignment