Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   V3I11_RS08400 Genome accession   NZ_CP144280
Coordinates   1665497..1666099 (+) Length   200 a.a.
NCBI ID   WP_005626527.1    Uniprot ID   A0ABY1VST8
Organism   Haemophilus influenzae strain P3_EMO     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1660497..1671099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V3I11_RS08385 (V3I11_08385) - 1661356..1663950 (+) 2595 WP_042593320.1 penicillin-binding protein 1A -
  V3I11_RS08390 (V3I11_08390) - 1664023..1664868 (+) 846 WP_011272052.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  V3I11_RS08395 (V3I11_08395) - 1665037..1665366 (+) 330 WP_005629464.1 YbaB/EbfC family nucleoid-associated protein -
  V3I11_RS08400 (V3I11_08400) recR 1665497..1666099 (+) 603 WP_005626527.1 recombination mediator RecR Machinery gene
  V3I11_RS08405 (V3I11_08405) - 1666115..1668070 (+) 1956 WP_011272053.1 DNA topoisomerase III -
  V3I11_RS08410 (V3I11_08410) secG 1668179..1668520 (+) 342 WP_005649335.1 preprotein translocase subunit SecG -
  V3I11_RS08420 (V3I11_08420) - 1669065..1670735 (-) 1671 WP_011272054.1 fructose-specific PTS transporter subunit EIIC -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22107.23 Da        Isoelectric Point: 6.4843

>NTDB_id=846809 V3I11_RS08400 WP_005626527.1 1665497..1666099(+) (recR) [Haemophilus influenzae strain P3_EMO]
MQSSPLLEHLIENLRCLPGVGPKSAQRMAYHLLQRNRSGGMNLARALTEAMSKIGHCSQCRDFTEEDTCNICNNPRRQNS
GLLCVVEMPADIQAIEQTGQFSGRYFVLMGHLSPLDGIGPREIGLDLLQKRLVEESFHEVILATNPTVEGDATANYIAEM
CRQHNIKVSRIAHGIPVGGELETVDGTTLTHSFLGRRQID

Nucleotide


Download         Length: 603 bp        

>NTDB_id=846809 V3I11_RS08400 WP_005626527.1 1665497..1666099(+) (recR) [Haemophilus influenzae strain P3_EMO]
ATGCAAAGCAGTCCACTTTTAGAACACCTTATTGAAAACTTACGTTGTCTTCCAGGCGTAGGGCCTAAATCTGCGCAACG
TATGGCTTATCATCTTTTACAGCGTAATCGTAGCGGTGGAATGAATTTAGCTCGAGCACTCACAGAAGCTATGTCTAAAA
TTGGTCATTGTTCACAATGTCGAGACTTTACGGAAGAAGACACTTGCAACATTTGCAATAATCCACGCCGTCAAAATTCA
GGTTTGCTTTGTGTCGTTGAAATGCCCGCAGATATTCAAGCGATTGAGCAAACGGGGCAATTTTCAGGACGTTATTTTGT
TTTAATGGGACATTTGTCTCCACTTGATGGTATTGGGCCTCGTGAAATTGGCTTAGATTTACTGCAAAAACGCTTAGTAG
AAGAATCTTTCCACGAAGTGATTCTTGCAACAAATCCAACAGTGGAGGGCGATGCGACGGCAAACTACATTGCTGAAATG
TGCCGCCAACATAATATCAAAGTGAGTCGTATCGCTCACGGTATCCCTGTCGGTGGTGAACTAGAAACTGTGGACGGCAC
AACGCTTACTCACTCTTTTCTAGGTCGTCGTCAAATCGACTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(83-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

44.221

99.5

0.44
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

43.216

99.5

0.43