Detailed information NTG0846776

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: QSU95_RS06700
• Genome accession: NZ_CP128204
• Coordinates: 1414497..1415918 (-)
• Length: 473 a.a.
• NCBI ID: WP_232658670.1
• Uniprot ID: -
• Organism: Vibrio furnissii strain VFBJ05
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1409497..1420918

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QSU95_RS06680 (QSU95_06680)	-	1409519..1412224 (+)	2706	WP_286212184.1	EAL domain-containing protein	-
QSU95_RS06685 (QSU95_06685)	cdd	1412315..1413202 (-)	888	WP_004726199.1	cytidine deaminase	-
QSU95_RS06690 (QSU95_06690)	-	1413411..1414091 (-)	681	WP_286212189.1	LrgB family protein	-
QSU95_RS06695 (QSU95_06695)	-	1414082..1414456 (-)	375	WP_004726196.1	CidA/LrgA family protein	-
QSU95_RS06700 (QSU95_06700)	sbcB	1414497..1415918 (-)	1422	WP_232658670.1	exodeoxyribonuclease I	Machinery gene
QSU95_RS06705 (QSU95_06705)	-	1416082..1417467 (-)	1386	WP_286212191.1	L-cystine transporter	-
QSU95_RS06710 (QSU95_06710)	-	1417669..1418352 (-)	684	WP_286212192.1	NAD(P)H-binding protein	-
QSU95_RS06715 (QSU95_06715)	-	1418753..1419364 (+)	612	WP_286212193.1	flavin reductase family protein	-
QSU95_RS06720 (QSU95_06720)	cobT	1419378..1420406 (+)	1029	WP_004726191.1	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	-

Sequence

Protein

• Length: 473 a.a.
• Molecular weight: 54358.74 Da
• Isoelectric Point: 4.8928

>NTDB_id=846776 QSU95_RS06700 WP_232658670.1 1414497..1415918(-) (sbcB) [Vibrio furnissii strain VFBJ05]
MQQQQPTYFFFDYETWGTSPAKDRPSQFAGVRTDMEFNIIGEPLVIYCQLPSDYLPAPEAALITGIIPQKAMAQGLPEPE
FIAKIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFLDPYAWSWQNGNSRWDLLDVMRACHALRPEGVVWPENDEGFTS
FKLEHLSKANGIEHENAHDAMADVIATIELAKKVKAAQPKLFEYFFSMRHKRKLNELIDIVNMTPLMHVSGMLGRECQYT
SWIVPIAWHPTNQNAVIVVDLAKDPQPLLDLDVESLHARLYTRHDDLAPDELPVPVKLVHLNKCPILAPAKTLTAENAAT
IGIDRELCLANLARIRQSPDIREKLAALFSIEREFEASNDVDTQLYDGFFSPADKAAMEIIRSTNPELLGELDITFSDKR
IEPLLFRYRARNFPWTLDDEEQRRWANHCRDYYETHLPDYMLNLENLVHEHESDEKKIAILKSVYQYVEKLAS

Nucleotide

• Length: 1422 bp

>NTDB_id=846776 QSU95_RS06700 WP_232658670.1 1414497..1415918(-) (sbcB) [Vibrio furnissii strain VFBJ05]
ATGCAGCAACAGCAGCCCACTTATTTTTTCTTTGACTATGAGACGTGGGGCACCAGCCCGGCCAAAGACCGTCCGAGTCA
GTTTGCTGGTGTGCGCACAGACATGGAGTTCAATATCATCGGTGAGCCGTTGGTGATTTACTGCCAATTGCCATCGGATT
ACCTGCCGGCGCCAGAAGCCGCGCTGATTACTGGCATCATTCCGCAAAAAGCGATGGCGCAAGGGCTGCCTGAACCCGAA
TTCATCGCCAAAATTCACGCCGAGTTATCGACACCAAACACCACAAGCCTTGGGTACAACAGCATTCGTTTCGACGATGA
AGTCACCCGCTATACCTGTTATCGCAACTTCCTTGACCCGTATGCTTGGAGCTGGCAAAACGGCAACTCCCGCTGGGATT
TACTGGATGTGATGCGTGCATGCCACGCATTGCGCCCGGAAGGTGTGGTGTGGCCAGAAAACGACGAAGGGTTTACCAGC
TTTAAGCTGGAACATTTGTCAAAAGCCAACGGCATTGAGCACGAAAATGCGCACGATGCGATGGCGGATGTGATTGCGAC
GATTGAACTGGCGAAAAAAGTCAAAGCCGCGCAACCCAAGCTGTTTGAGTATTTCTTCTCAATGCGTCATAAACGCAAGC
TCAATGAGCTGATTGATATTGTCAACATGACGCCGCTGATGCATGTCTCTGGCATGCTGGGCCGTGAATGCCAATACACC
AGTTGGATTGTGCCGATTGCTTGGCACCCGACCAACCAAAACGCGGTCATTGTGGTGGATTTAGCCAAAGACCCGCAGCC
GCTGCTCGATTTGGATGTGGAATCACTGCACGCGCGTTTATACACTCGTCATGACGATTTAGCGCCGGATGAATTGCCTG
TACCCGTCAAGCTGGTTCATCTCAACAAGTGTCCGATTCTGGCTCCAGCGAAAACGCTCACCGCCGAAAATGCCGCCACC
ATCGGCATCGACCGCGAACTGTGTTTGGCAAACTTGGCACGCATTCGTCAGTCTCCCGATATTCGCGAAAAACTTGCGGC
GCTGTTTAGCATTGAGCGCGAATTTGAAGCCTCGAACGATGTGGATACGCAGCTCTATGACGGGTTCTTCTCCCCTGCAG
ATAAAGCTGCGATGGAAATTATTCGTTCCACAAATCCTGAACTGCTCGGCGAGTTGGATATCACGTTCAGCGACAAACGC
ATTGAACCCCTGCTGTTTCGTTACCGCGCGCGCAACTTCCCGTGGACGCTCGACGACGAAGAGCAACGCCGCTGGGCGAA
CCATTGTCGCGATTACTACGAAACACATCTGCCTGATTACATGCTGAACCTGGAAAATCTGGTGCATGAACATGAAAGTG
ATGAAAAGAAAATCGCGATTCTCAAATCCGTTTACCAATACGTAGAGAAGCTAGCCTCTTAG

Domains

Predicted by InterproScan.

• Exonuclease C-terminal (Exonuc_X-T_C) (209-469)

• Exonuclease (RNase_T) (10-190)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	83.439	99.577	0.831