Detailed information    

insolico Bioinformatically predicted

Overview


Name   amiE   Type   Regulator
Locus tag   V3I11_RS02430 Genome accession   NZ_CP144280
Coordinates   497271..498263 (-) Length   330 a.a.
NCBI ID   WP_005694258.1    Uniprot ID   -
Organism   Haemophilus influenzae strain P3_EMO     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context


Location: 492271..503263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V3I11_RS02400 (V3I11_02400) artQ 492397..493062 (-) 666 WP_042593810.1 arginine ABC transporter permease ArtQ -
  V3I11_RS02405 (V3I11_02405) - 493066..493785 (-) 720 WP_005660416.1 lysine/arginine/ornithine ABC transporter substrate-binding protein -
  V3I11_RS02410 (V3I11_02410) artP 493803..494534 (-) 732 WP_005657167.1 arginine ABC transporter ATP-binding protein ArtP -
  V3I11_RS02415 (V3I11_02415) lpcA 494660..495244 (-) 585 WP_005663828.1 D-sedoheptulose 7-phosphate isomerase -
  V3I11_RS02420 (V3I11_02420) - 495450..496256 (+) 807 WP_042593811.1 DNA ligase -
  V3I11_RS02425 (V3I11_02425) - 496285..497268 (-) 984 WP_038441344.1 peptide ABC transporter ATP-binding protein -
  V3I11_RS02430 (V3I11_02430) amiE 497271..498263 (-) 993 WP_005694258.1 dipeptide ABC transporter ATP-binding protein Regulator
  V3I11_RS02435 (V3I11_02435) - 498273..499160 (-) 888 WP_005653671.1 ABC transporter permease subunit -
  V3I11_RS02440 (V3I11_02440) - 499175..500176 (-) 1002 WP_005647473.1 ABC transporter permease subunit -
  V3I11_RS02445 (V3I11_02445) uvrD 500266..502446 (-) 2181 WP_042593871.1 DNA helicase II -

Sequence


Protein


Download         Length: 330 a.a.        Molecular weight: 36328.10 Da        Isoelectric Point: 6.5838

>NTDB_id=846774 V3I11_RS02430 WP_005694258.1 497271..498263(-) (amiE) [Haemophilus influenzae strain P3_EMO]
MALLDVKELSVHFGDKKTPFKAVDRISYQVAQGEVLGIVGESGSGKSVSSLAIMGLIDHPGRVSAESLQFENTDLLTLES
KAKRQLIGADVAMIFQDPMTSLNPAYTVGFQIMEALKTHEGGTKKARKDRTLELLKLVGIPDPESRIDVYPHQLSGGMSQ
RVMIAMAIACRPKLLIADEPTTALDVTIQAQIMELLLELQKKECMSLILITHDLALVAEAAERIIVMYAGQIVEEGTAKD
IFREPKHPYTQALLRSLPEFAEGKSRLESLQGVVPGKYDRPTGCLLNPRCPYATEYCRQVEPQLHHIGSRKVKCHTPLNE
QGNPVEYQGA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=846774 V3I11_RS02430 WP_005694258.1 497271..498263(-) (amiE) [Haemophilus influenzae strain P3_EMO]
ATGGCATTATTAGACGTAAAAGAACTTTCTGTTCACTTTGGCGATAAAAAAACGCCATTTAAAGCAGTGGATCGCATTAG
CTATCAAGTCGCACAAGGCGAAGTGCTTGGCATTGTGGGAGAATCAGGTTCGGGTAAATCTGTGAGTTCTCTCGCAATTA
TGGGATTAATTGATCATCCTGGACGTGTATCTGCTGAATCCTTGCAATTTGAAAATACTGATTTACTCACTTTAGAGAGT
AAAGCTAAACGCCAGCTTATTGGTGCTGATGTAGCAATGATTTTCCAAGATCCGATGACAAGTTTGAATCCTGCTTATAC
TGTGGGTTTCCAAATTATGGAAGCGTTGAAAACTCACGAAGGCGGCACAAAAAAGGCAAGAAAAGACCGCACTTTAGAGC
TTTTAAAATTGGTCGGTATTCCTGATCCTGAATCTCGGATTGATGTTTATCCCCATCAGCTGTCTGGTGGAATGAGCCAG
CGCGTGATGATTGCGATGGCAATTGCTTGCAGACCTAAATTATTGATTGCTGACGAACCAACCACGGCATTGGACGTGAC
TATCCAAGCTCAAATTATGGAACTCTTACTTGAATTGCAAAAGAAAGAATGTATGTCCCTAATTTTGATTACTCACGATC
TAGCACTTGTGGCTGAAGCGGCAGAGCGAATTATCGTGATGTATGCTGGACAAATCGTTGAAGAAGGCACCGCAAAAGAT
ATTTTCCGCGAGCCAAAACACCCTTACACACAAGCCTTGTTACGTTCATTACCTGAATTTGCAGAGGGAAAATCTCGCTT
AGAATCATTACAAGGGGTCGTCCCTGGAAAATACGATCGCCCAACAGGCTGTTTATTAAATCCTCGCTGCCCTTATGCCA
CCGAATATTGTCGCCAAGTTGAACCTCAATTGCATCATATCGGTTCGCGTAAAGTAAAATGCCATACTCCGCTGAACGAG
CAAGGCAATCCAGTTGAATATCAAGGAGCTTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

46.259

89.091

0.412

  amiE Streptococcus thermophilus LMG 18311

46.575

88.485

0.412

  amiE Streptococcus thermophilus LMD-9

46.575

88.485

0.412

  oppD Streptococcus mutans UA159

45

90.909

0.409