Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   QSU95_RS02405 Genome accession   NZ_CP128204
Coordinates   490616..491134 (+) Length   172 a.a.
NCBI ID   WP_286211646.1    Uniprot ID   -
Organism   Vibrio furnissii strain VFBJ05     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 485616..496134
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSU95_RS02395 (QSU95_02395) gshA 488418..489983 (+) 1566 WP_004723866.1 glutamate--cysteine ligase -
  QSU95_RS02400 (QSU95_02400) - 489985..490590 (+) 606 WP_158108069.1 hypothetical protein -
  QSU95_RS02405 (QSU95_02405) luxS 490616..491134 (+) 519 WP_286211646.1 S-ribosylhomocysteine lyase Regulator
  QSU95_RS02410 (QSU95_02410) - 491241..492515 (-) 1275 WP_004723872.1 HlyC/CorC family transporter -
  QSU95_RS02415 (QSU95_02415) - 492606..493400 (-) 795 WP_004723874.1 inner membrane protein YpjD -
  QSU95_RS02420 (QSU95_02420) ffh 493613..494992 (+) 1380 WP_004723876.1 signal recognition particle protein -
  QSU95_RS02425 (QSU95_02425) rpsP 495218..495466 (+) 249 WP_004723879.1 30S ribosomal protein S16 -
  QSU95_RS02430 (QSU95_02430) rimM 495494..496048 (+) 555 WP_004723882.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18855.61 Da        Isoelectric Point: 4.7994

>NTDB_id=846765 QSU95_RS02405 WP_286211646.1 490616..491134(+) (luxS) [Vibrio furnissii strain VFBJ05]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTMPNKDILSEKGIHTLEHLYAGFMRAHLNGANVEIIDISP
MGCRTGFYMSLIGAPSEEQVAAAWLASMQDVLSVESQNQIPELNEYQCGTAAMHSLNEAKAIAETVIAAGIQVNKNDELA
LPESMLNELKVH

Nucleotide


Download         Length: 519 bp        

>NTDB_id=846765 QSU95_RS02405 WP_286211646.1 490616..491134(+) (luxS) [Vibrio furnissii strain VFBJ05]
ATGCCATTATTAGACAGTTTTACCGTCGACCACACTCGCATGAACGCACCGGCTGTGCGTGTTGCGAAAACCATGCAAAC
GCCGAAAGGCGACACCATTACGGTGTTTGACCTGCGTTTCACCATGCCAAACAAAGACATTCTGTCCGAGAAAGGGATTC
ATACGCTGGAGCATCTGTACGCTGGCTTTATGCGTGCGCACCTCAATGGCGCGAACGTGGAAATTATCGACATCTCGCCG
ATGGGATGTCGCACCGGGTTTTACATGAGCCTGATTGGTGCGCCAAGCGAAGAGCAAGTCGCCGCCGCTTGGTTGGCGTC
GATGCAAGACGTATTGAGTGTCGAAAGTCAGAATCAAATTCCTGAGCTGAACGAATACCAGTGCGGCACCGCAGCGATGC
ACTCCCTGAATGAAGCCAAAGCGATTGCTGAAACCGTGATTGCCGCTGGCATTCAGGTCAATAAGAACGATGAACTGGCG
CTGCCCGAATCGATGCTCAATGAGCTGAAAGTGCACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

91.279

100

0.913