Detailed information NTG0846762

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QSU95_RS02285
• Genome accession: NZ_CP128204
• Coordinates: 468671..469660 (+)
• Length: 329 a.a.
• NCBI ID: WP_004723838.1
• Uniprot ID: A0A0Q2V080
• Organism: Vibrio furnissii strain VFBJ05
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 463671..474660

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QSU95_RS02250 (QSU95_02250)	ftsB	463686..463970 (+)	285	WP_004723824.1	cell division protein FtsB	-
QSU95_RS02255 (QSU95_02255)	ispD	463967..464680 (+)	714	WP_004723825.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QSU95_RS02260 (QSU95_02260)	ispF	464730..465206 (+)	477	WP_004723827.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QSU95_RS02265 (QSU95_02265)	truD	465238..466284 (+)	1047	WP_238819622.1	tRNA pseudouridine(13) synthase TruD	-
QSU95_RS02270 (QSU95_02270)	surE	466277..467044 (+)	768	WP_004723832.1	5'/3'-nucleotidase SurE	-
QSU95_RS02275 (QSU95_02275)	-	467037..467663 (+)	627	WP_014205779.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
QSU95_RS02280 (QSU95_02280)	nlpD	467663..468598 (+)	936	WP_014205778.1	murein hydrolase activator NlpD	-
QSU95_RS02285 (QSU95_02285)	rpoS	468671..469660 (+)	990	WP_004723838.1	RNA polymerase sigma factor RpoS	Regulator
QSU95_RS02290 (QSU95_02290)	mutS	469729..472290 (-)	2562	WP_286211640.1	DNA mismatch repair protein MutS	-
QSU95_RS02295 (QSU95_02295)	pncC	472375..472869 (+)	495	WP_286211641.1	nicotinamide-nucleotide amidase	-
QSU95_RS02300 (QSU95_02300)	recA	473036..474088 (+)	1053	WP_004723845.1	recombinase RecA	Machinery gene
QSU95_RS02305 (QSU95_02305)	recX	474183..474653 (+)	471	WP_004723847.1	recombination regulator RecX	-

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37741.44 Da
• Isoelectric Point: 4.4379

>NTDB_id=846762 QSU95_RS02285 WP_004723838.1 468671..469660(+) (rpoS) [Vibrio furnissii strain VFBJ05]
MSISNTATKVEEFEFDSEAVNNAATDQELTTNDNDQSEEVREEFDASTKSLDATQMYLSEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAVELDKPVDDVSKMLRLNERISSVDTPIGGDGDKALLDIIPDINNS
DPEVSTQDDDIRDSLVAWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILMKQGLNM
ESLFNVEND

Nucleotide

• Length: 990 bp

>NTDB_id=846762 QSU95_RS02285 WP_004723838.1 468671..469660(+) (rpoS) [Vibrio furnissii strain VFBJ05]
ATGAGTATCAGCAATACAGCCACTAAAGTCGAAGAGTTTGAGTTCGATTCAGAAGCCGTGAATAACGCGGCGACCGACCA
AGAACTGACTACCAACGATAATGACCAGTCTGAAGAGGTTCGTGAAGAGTTTGATGCTTCCACGAAAAGCCTCGATGCCA
CTCAGATGTATCTGAGTGAGATTGGTTTCTCACCCTTATTAACCGCCGAAGAAGAAGTGCTCTATGCTCGCCGCGCCTTG
CGTGGTGATGAGGCTGCGCGCAAACGCATGATCGAGAGCAACTTACGTCTGGTGGTCAAAATTTCTCGCCGTTATAGCAA
TCGGGGCTTGGCACTGCTTGACCTGATTGAAGAGGGCAACCTTGGCCTCATTCGTGCAGTAGAGAAATTCGACCCAGAAC
GCGGTTTCCGTTTTTCGACTTATGCTACCTGGTGGATTCGTCAGACCATTGAACGTGCTCTGATGAACCAGACTCGTACA
ATTCGTTTACCGATTCATGTGGTGAAAGAGCTGAACATCTACTTGCGTACTGCGCGTGAGCTGTCTCAGAAACTCGACCA
CGAACCGACCGCGGAAGAAATTGCCGTGGAACTGGATAAGCCAGTGGATGATGTCAGCAAAATGCTCCGTCTGAACGAGC
GCATTAGCTCCGTCGATACGCCAATTGGCGGCGATGGTGACAAAGCATTGCTCGATATCATTCCTGATATCAACAATTCC
GACCCTGAAGTCTCCACACAGGATGACGATATTCGTGATTCGCTGGTGGCTTGGCTCGATGAGCTCAATCCGAAACAGAA
AGAAGTGCTGGCTCGCCGTTTTGGCTTGTTAGGGTATGAACCATCAACACTGGAAGAAGTGGGCCGCGAGATCAATTTGA
CCCGTGAACGTGTGCGTCAAATTCAGGTGGAAGGCTTGCGCCGACTAAGAGAAATCCTGATGAAACAGGGGTTGAACATG
GAATCGCTGTTTAATGTGGAAAACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A0A0Q2V080

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	88.024	100	0.894