Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   QSU96_RS17660 Genome accession   NZ_CP128201
Coordinates   414133..416184 (+) Length   683 a.a.
NCBI ID   WP_286281990.1    Uniprot ID   -
Organism   Vibrio furnissii strain VFBJ07     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 409133..421184
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSU96_RS17650 (QSU96_17650) - 409806..410948 (+) 1143 WP_286281986.1 exonuclease SbcCD subunit D -
  QSU96_RS17655 (QSU96_17655) - 410952..413993 (+) 3042 WP_286281988.1 SMC family ATPase -
  QSU96_RS17660 (QSU96_17660) cqsS 414133..416184 (+) 2052 WP_286281990.1 hybrid sensor histidine kinase/response regulator Regulator
  QSU96_RS17665 (QSU96_17665) cqsA 416330..417511 (-) 1182 WP_014257352.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  QSU96_RS17670 (QSU96_17670) - 417729..418688 (-) 960 WP_004728184.1 TDT family transporter -
  QSU96_RS17675 (QSU96_17675) clcA 418849..420246 (-) 1398 WP_004728183.1 H(+)/Cl(-) exchange transporter ClcA -

Sequence

Protein


Download         Length: 683 a.a.        Molecular weight: 78754.51 Da        Isoelectric Point: 5.9814

>NTDB_id=846749 QSU96_RS17660 WP_286281990.1 414133..416184(+) (cqsS) [Vibrio furnissii strain VFBJ07]
MEVVKKIYQYAEPNLTLVGWMGFIGFPFYYYVWAHVFPQPYESLLLRGFCSCLFGGIVFRNAVPKLWQRYLPYYYLFMIG
FCLPFFFAYMMLMNDWSTVWAMSFMASIFLHILLVHETKVMLAQAALSVAAAYGAVYWLQHYEPQHVILWPYVPIFLFTY
VFGNLFYFRNQSSHESKVSIAKSFGAGIAHEMRNPLSALKSSVDVLRSILPAQPANPTQGAYIDGQDLTLLHEILGNADE
VIHTGNETIDLLLTSIDENRVSTSTFKRLSAKEVVDHALHSFSYKRALDRQAVTLNAINDFDYFGSETLLKFALYNLLKN
AFYYQNSEHFHIEVTLITRGQENLIIVRDNGVGIAPDRLDDIFKDFYTFGKNGSYGLGLPFCRKVMKSFGGNIRCASVLG
EWTEFTLSFPQYHSERVSHIKLDLMKNKSVLYVGTQGLMSRHLSEKAFYQGFRLHHATLSEALTREEYEFEYDIILLDLE
QIDDQWQSLVELETKLHFTEAKIVYLYDKQRAYPINIERHLRVVPLEIRQLLLDTDKELDQLLFEVDDVAPDHNVVPIKQ
PKYERRILVVDDNQSLRTFTALLLEKQGYEVVQANDGQQALDAIEHNEFDLILMDIEMPIIDGIEATRVIRDSNKPYCHI
PIVGHTGDNSPLTIEKIHQSGMNDYIVKPADKDKLLGKLANWI

Nucleotide


Download         Length: 2052 bp        

>NTDB_id=846749 QSU96_RS17660 WP_286281990.1 414133..416184(+) (cqsS) [Vibrio furnissii strain VFBJ07]
ATGGAAGTCGTAAAGAAAATATACCAATATGCTGAACCGAACCTCACGTTAGTGGGGTGGATGGGGTTTATTGGTTTTCC
GTTTTACTACTATGTGTGGGCGCATGTGTTTCCGCAGCCCTATGAATCGCTGCTGCTGCGCGGTTTCTGTTCGTGCCTGT
TTGGCGGCATTGTGTTTCGAAACGCAGTGCCGAAGTTGTGGCAGCGCTACTTACCTTACTATTACCTGTTTATGATCGGC
TTCTGTTTGCCGTTCTTCTTTGCCTATATGATGTTGATGAACGATTGGTCCACGGTGTGGGCGATGTCATTCATGGCATC
CATCTTCCTACATATTCTGCTGGTTCATGAGACCAAAGTGATGCTGGCGCAAGCTGCGTTATCCGTCGCAGCGGCGTATG
GCGCCGTGTATTGGTTGCAACATTACGAACCACAGCATGTCATTTTGTGGCCTTATGTGCCGATTTTCCTGTTCACTTAC
GTGTTCGGGAATCTGTTTTATTTCAGAAACCAAAGCTCGCATGAGTCAAAGGTGTCGATCGCGAAATCCTTTGGCGCCGG
GATTGCACATGAAATGCGCAACCCGCTCAGTGCGTTGAAATCGTCGGTTGATGTGCTGCGTTCGATTTTGCCCGCACAGC
CGGCCAATCCAACCCAAGGTGCATACATCGACGGACAGGATTTAACTTTGCTGCATGAAATTTTGGGCAACGCTGACGAA
GTGATCCACACCGGGAACGAAACCATCGATCTGTTACTGACATCTATCGATGAAAACCGCGTCTCGACCTCAACATTCAA
GCGTTTGTCGGCCAAAGAGGTGGTTGACCACGCCCTGCATTCCTTCTCGTATAAACGCGCGTTGGATCGTCAGGCCGTCA
CGCTCAATGCCATCAACGATTTTGACTATTTCGGTAGTGAAACCTTGCTGAAGTTTGCCCTCTACAATTTATTGAAAAAT
GCCTTTTATTATCAGAACAGTGAACATTTTCATATCGAAGTGACGCTCATCACTCGGGGCCAAGAAAACCTCATCATCGT
GCGAGACAACGGCGTGGGCATCGCCCCAGACCGCTTGGATGACATCTTTAAGGACTTCTATACCTTTGGCAAAAATGGCA
GTTACGGTTTGGGTTTGCCGTTTTGTCGCAAGGTGATGAAGTCGTTCGGTGGCAATATCCGTTGTGCCTCCGTGCTGGGG
GAATGGACGGAGTTCACGTTAAGTTTTCCTCAATATCACTCTGAACGGGTCTCGCACATCAAACTGGATTTAATGAAAAA
TAAATCGGTGTTGTATGTTGGTACGCAAGGGCTGATGAGCCGACATCTGAGCGAGAAAGCGTTTTACCAAGGATTTCGCC
TACATCACGCAACGCTGAGCGAGGCGTTAACGCGTGAAGAGTACGAGTTTGAATACGATATTATTCTGCTGGATTTAGAG
CAGATCGACGATCAGTGGCAGTCATTGGTCGAGCTGGAAACCAAGCTGCATTTTACCGAAGCCAAAATTGTTTACCTTTA
CGACAAGCAACGCGCATACCCCATCAATATTGAGCGCCATTTGCGGGTCGTACCTTTAGAAATTCGTCAACTGCTGCTCG
ATACCGACAAAGAACTCGATCAACTGCTGTTTGAGGTGGATGACGTTGCACCGGATCACAATGTTGTGCCGATCAAACAG
CCGAAATATGAACGCCGTATTCTGGTGGTAGATGACAACCAATCCTTGCGCACATTCACGGCGTTGCTACTTGAAAAGCA
GGGCTATGAAGTGGTGCAGGCCAATGATGGTCAACAGGCGTTGGATGCAATAGAGCACAACGAGTTCGACCTGATTTTGA
TGGACATTGAAATGCCGATCATTGATGGCATTGAAGCGACGCGCGTGATTCGGGATTCCAACAAGCCGTACTGCCACATT
CCGATTGTTGGCCACACTGGGGATAATAGCCCGCTGACGATTGAGAAAATCCACCAATCTGGCATGAACGATTACATCGT
TAAACCGGCCGATAAAGACAAGCTGCTGGGCAAACTGGCCAATTGGATCTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(567-679)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(307-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

58.918

100

0.59