Detailed information    

insolico Bioinformatically predicted

Overview


Name   luxQ   Type   Regulator
Locus tag   QSU96_RS17185 Genome accession   NZ_CP128201
Coordinates   286121..288697 (+) Length   858 a.a.
NCBI ID   WP_286281909.1    Uniprot ID   -
Organism   Vibrio furnissii strain VFBJ07     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context


Location: 281121..293697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSU96_RS17155 (QSU96_17155) - 281384..282250 (-) 867 WP_286281905.1 hypothetical protein -
  QSU96_RS17160 (QSU96_17160) - 282899..283216 (-) 318 WP_004726770.1 DUF496 family protein -
  QSU96_RS17165 (QSU96_17165) - 283406..283603 (+) 198 WP_014257418.1 hypothetical protein -
  QSU96_RS17170 (QSU96_17170) - 283647..284282 (+) 636 WP_004726766.1 YceH family protein -
  QSU96_RS17175 (QSU96_17175) - 284293..284583 (+) 291 WP_286281907.1 GIY-YIG nuclease family protein -
  QSU96_RS17180 (QSU96_17180) luxP 285003..286100 (+) 1098 WP_004726763.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  QSU96_RS17185 (QSU96_17185) luxQ 286121..288697 (+) 2577 WP_286281909.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ Regulator
  QSU96_RS17190 (QSU96_17190) - 288694..289374 (-) 681 WP_004726760.1 flagellar brake protein -
  QSU96_RS17195 (QSU96_17195) - 289499..290023 (-) 525 WP_004726759.1 hypothetical protein -
  QSU96_RS17200 (QSU96_17200) - 290175..290546 (-) 372 WP_014257415.1 NirD/YgiW/YdeI family stress tolerance protein -
  QSU96_RS17205 (QSU96_17205) - 290712..292196 (+) 1485 WP_286281911.1 cobyric acid synthase -
  QSU96_RS17210 (QSU96_17210) modA 292205..292978 (+) 774 WP_286282472.1 molybdate ABC transporter substrate-binding protein -
  QSU96_RS17215 (QSU96_17215) modB 292980..293678 (+) 699 WP_038152199.1 molybdate ABC transporter permease subunit -

Sequence


Protein


Download         Length: 858 a.a.        Molecular weight: 95970.34 Da        Isoelectric Point: 4.9933

>NTDB_id=846747 QSU96_RS17185 WP_286281909.1 286121..288697(+) (luxQ) [Vibrio furnissii strain VFBJ07]
MSIRASTVKQKRKIATFISRAIVTVLGALTLTVLFQSYQISSRLISQEVARTSTQTSSLIQNLFNYRLATLQIHQDSSAK
NASLIQALNSDSGAALDQYFLSVDQLELNNTPDIRFITDLKEMVWEDGNSQFYGVPPKELNKIIRKVSISSNWHLIQTPS
VLGTAYLLVRRSPIVDTATGEVIGFLYVSTVLNNNFTLIETIRDSSNSQNLILTVGSEVLASTLNGDESYSTFDVLEDGL
SDALYDKNMVAKTALEVEGVPTYLSIYSVQSNENALSLRNNYYFWMVFALVAMVGVSILTRWWLQRRIESEIDGLMTYTH
KVAERGLDDFFPGSKIYEFDHFGRTLEHTFQRLSDQEKQFEDLFNFALSPTILWTAEGELIRMNPSAHSHFLRNNADDHS
LFSVLKRQLIPQIKLAAQGEILKEVNTEVDGRVILWNLSPIVVENRIESIITQGQDVTSIAEAEKQSRIARKEAEESARV
RADFLAKMSHELRTPLNGILGVSQLLKRTVTEKEQAEQVNVLCSSGEHLLAVLNDILDFSKIEQGKFRIQKADFPLVDVV
SAIERIYRPLCREKGLTLTLNTNISDDLVVRTDQVRLNQILFNLLNNSVKFTHEGAINIQLHLIEAEAGAKLEITVLDTG
IGIREQDLALIFEPFVQAESTNTREYGGSGLGLAIVHSLIEMLGGSIEVKSSFGVGTRFTIELPLEIVTAETQTVAHNEG
KSRYELFDGAVNVLLVEDNHTNAFIARAFCKKYGMNVDWVTDGLQAIEKVKHQPYDLILMDNQLPYLDGVDATRIIKHDM
GLAMPVYACTADGMAETQEAFMSAGAEYVIVKPIKEETLHQALVNFKTHAAELAVTER

Nucleotide


Download         Length: 2577 bp        

>NTDB_id=846747 QSU96_RS17185 WP_286281909.1 286121..288697(+) (luxQ) [Vibrio furnissii strain VFBJ07]
GTGAGCATCAGGGCTAGTACAGTCAAACAGAAAAGAAAAATAGCAACCTTCATCAGCCGAGCCATTGTCACTGTGCTCGG
CGCGCTCACGTTGACGGTGCTTTTCCAGAGCTATCAAATTAGCAGCCGCTTGATTTCACAAGAAGTGGCACGCACATCGA
CCCAAACCTCCAGCCTGATTCAAAACCTGTTTAATTATCGTCTCGCCACGTTGCAAATTCACCAAGACAGCAGCGCGAAA
AATGCCAGTCTTATTCAAGCGTTAAACAGCGACAGCGGCGCTGCGTTGGATCAGTATTTCTTGAGCGTCGATCAGCTCGA
ACTCAACAATACACCAGACATTCGTTTCATCACCGACCTCAAAGAAATGGTATGGGAAGATGGCAATTCGCAGTTTTATG
GCGTTCCCCCCAAAGAGCTCAATAAGATCATTCGCAAAGTGTCGATCAGCAGCAACTGGCATCTGATTCAAACGCCATCG
GTGCTGGGCACGGCGTATTTATTGGTTCGCCGCTCGCCGATTGTGGATACGGCAACGGGTGAAGTGATTGGCTTTTTGTA
TGTCAGTACCGTGCTCAACAACAACTTCACGTTGATTGAAACCATTCGCGACAGCAGTAACTCGCAAAACCTGATTTTAA
CGGTGGGCTCTGAGGTGTTGGCCTCGACACTCAATGGCGATGAATCCTATTCGACCTTTGATGTGCTGGAAGATGGACTG
AGCGATGCCTTGTACGACAAAAATATGGTGGCCAAAACGGCACTGGAAGTGGAAGGGGTGCCGACGTATCTCAGCATCTA
TTCTGTGCAAAGCAACGAAAACGCCCTGAGCCTGCGCAACAACTATTATTTCTGGATGGTGTTCGCTTTGGTGGCGATGG
TTGGGGTGTCCATTCTCACGCGCTGGTGGTTGCAGCGTAGGATTGAATCCGAAATCGATGGTTTGATGACCTACACCCAC
AAAGTGGCGGAGCGGGGCTTGGATGACTTCTTCCCCGGCTCGAAAATCTATGAATTCGACCACTTTGGCCGAACGTTGGA
GCACACCTTTCAGCGCTTATCCGATCAAGAGAAACAGTTCGAAGATTTGTTTAACTTTGCGCTTTCACCCACCATTTTAT
GGACGGCTGAGGGCGAATTGATTCGTATGAACCCGTCAGCACATTCGCACTTCCTGCGCAATAACGCCGACGATCATTCG
CTATTTTCAGTGCTGAAACGCCAACTGATTCCACAAATTAAATTGGCGGCGCAAGGGGAAATCCTCAAAGAAGTGAATAC
GGAAGTGGATGGTCGAGTGATCTTGTGGAACTTGTCTCCCATTGTGGTTGAAAACCGCATTGAATCGATTATCACACAAG
GTCAAGACGTCACTTCTATTGCTGAGGCCGAAAAGCAAAGCCGCATTGCGCGTAAAGAGGCGGAAGAGTCGGCGCGCGTT
CGGGCCGATTTTCTGGCGAAAATGAGTCATGAATTGCGCACGCCACTGAATGGCATTTTGGGCGTTTCGCAACTGCTGAA
ACGCACAGTCACGGAGAAAGAGCAGGCCGAACAGGTCAACGTGCTGTGCAGCAGTGGTGAGCATCTATTGGCGGTGCTGA
ATGACATTCTTGATTTCTCTAAGATCGAGCAAGGCAAATTTCGCATCCAGAAAGCGGATTTCCCGTTGGTGGATGTGGTG
TCTGCCATTGAGCGCATCTATCGGCCTTTGTGTCGTGAGAAAGGCTTAACGCTCACTCTCAATACCAATATTAGCGACGA
TTTAGTGGTGCGTACCGATCAAGTGCGACTCAATCAGATCCTGTTTAATCTGCTCAACAATTCGGTGAAATTCACTCACG
AGGGCGCCATCAATATTCAGCTTCATCTTATCGAGGCTGAAGCGGGCGCAAAACTTGAGATTACCGTTTTAGATACTGGC
ATTGGGATTCGTGAGCAAGATTTAGCGCTCATTTTTGAACCGTTTGTGCAGGCGGAATCGACCAACACGCGTGAATATGG
TGGCAGCGGCCTTGGGCTGGCTATTGTGCATAGCTTGATTGAAATGCTTGGCGGTTCGATTGAAGTGAAGTCGAGCTTTG
GCGTTGGCACGCGATTTACCATCGAATTGCCGTTGGAGATTGTGACCGCCGAAACGCAAACCGTCGCACACAACGAAGGC
AAGTCACGCTATGAGTTGTTTGACGGGGCGGTGAACGTGCTCTTGGTGGAAGACAATCACACCAATGCCTTCATCGCACG
TGCGTTCTGCAAAAAATACGGCATGAATGTGGATTGGGTGACTGATGGATTGCAAGCGATCGAGAAAGTGAAACACCAGC
CCTACGATCTGATTTTAATGGACAACCAACTGCCGTATCTCGATGGTGTGGATGCCACGCGCATCATCAAACATGACATG
GGGCTGGCGATGCCGGTCTACGCGTGTACTGCCGATGGTATGGCTGAAACGCAAGAGGCCTTTATGTCGGCAGGTGCGGA
ATACGTCATTGTGAAACCCATCAAAGAAGAGACCTTGCATCAAGCCTTGGTGAATTTCAAAACGCATGCCGCCGAGCTTG
CGGTGACCGAACGTTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxQ Vibrio cholerae strain A1552

63.146

99.301

0.627