Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   QSU96_RS13380 Genome accession   NZ_CP128200
Coordinates   2873014..2874240 (+) Length   408 a.a.
NCBI ID   WP_004729085.1    Uniprot ID   -
Organism   Vibrio furnissii strain VFBJ07     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2868014..2879240
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSU96_RS13355 (QSU96_13355) fldB 2868394..2868915 (+) 522 WP_004729075.1 flavodoxin FldB -
  QSU96_RS13360 (QSU96_13360) ampD 2868951..2869505 (-) 555 WP_286279616.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  QSU96_RS13365 (QSU96_13365) nadC 2869656..2870543 (+) 888 WP_154180385.1 carboxylating nicotinate-nucleotide diphosphorylase -
  QSU96_RS13370 (QSU96_13370) - 2870791..2871240 (+) 450 WP_055466517.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  QSU96_RS13375 (QSU96_13375) pilB 2871247..2872935 (+) 1689 WP_238773636.1 type IV-A pilus assembly ATPase PilB Machinery gene
  QSU96_RS13380 (QSU96_13380) pilC 2873014..2874240 (+) 1227 WP_004729085.1 type II secretion system F family protein Machinery gene
  QSU96_RS13385 (QSU96_13385) pilD 2874292..2875161 (+) 870 WP_004729087.1 A24 family peptidase Machinery gene
  QSU96_RS13390 (QSU96_13390) coaE 2875164..2875772 (+) 609 WP_143680340.1 dephospho-CoA kinase -
  QSU96_RS13395 (QSU96_13395) zapD 2875805..2876545 (+) 741 WP_004729090.1 cell division protein ZapD -
  QSU96_RS13400 (QSU96_13400) yacG 2876603..2876800 (+) 198 WP_004729092.1 DNA gyrase inhibitor YacG -
  QSU96_RS13405 (QSU96_13405) parC 2876880..2879153 (-) 2274 WP_004729093.1 DNA topoisomerase IV subunit A -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44783.05 Da        Isoelectric Point: 10.5674

>NTDB_id=846733 QSU96_RS13380 WP_004729085.1 2873014..2874240(+) (pilC) [Vibrio furnissii strain VFBJ07]
MKPNKAAELKNFRWKGINSSGRKVAGHTLAISEIEVRDKLKEQHIQVKKIKKGSISLLTRLTHRVKTRDITLLTRQLSTM
LTTGVPIVQALKLVGDNHRKAEMKSILAQVTKGVEAGTPMSKAMRTASPHFDALYVDLIATGEQSGNLAEVFERLATYRE
KSEQLRAKVIKALIYPAMVMLVALGVSYLMLTMVIPEFESMFKGFGAELPWFTQQILKLSHGVQAYSLWGVLATSAGLLA
LKTARNKSLVFRLKTSRLGLRFPVVGAVLAKAAIAKFSRTLATSFSAGIPILASLKTTAKTAGNVHFETAIQEVHRHTAA
GMPMYIAMRNTDAFPEMVLQMVMIGEESGKLDDMLNKVATIYEFEVDNTVDNLGKILEPLIIVFLGVVVGGLVVAMYLPI
FNLMSVLG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=846733 QSU96_RS13380 WP_004729085.1 2873014..2874240(+) (pilC) [Vibrio furnissii strain VFBJ07]
ATGAAACCAAATAAAGCTGCCGAATTGAAAAACTTCCGCTGGAAAGGCATCAACAGCTCCGGGCGAAAAGTTGCCGGGCA
CACCTTGGCCATCAGTGAAATCGAAGTGCGCGACAAGCTCAAAGAGCAGCACATTCAGGTGAAGAAGATCAAAAAAGGCA
GCATTTCACTGCTGACTCGCCTCACCCACCGTGTCAAGACTCGCGACATCACCCTGCTCACACGCCAGCTTTCCACCATG
CTGACTACAGGCGTGCCCATCGTTCAAGCGTTGAAACTGGTTGGCGACAATCACCGCAAAGCAGAAATGAAATCAATTCT
GGCCCAAGTCACCAAAGGGGTAGAAGCTGGCACCCCGATGTCTAAAGCGATGCGCACCGCCAGCCCACATTTTGATGCGC
TGTACGTTGACCTCATAGCCACCGGCGAGCAATCCGGGAATTTGGCCGAAGTGTTTGAGCGCCTTGCCACCTATCGAGAA
AAAAGCGAACAACTACGCGCCAAAGTGATCAAGGCGCTGATCTATCCGGCGATGGTGATGTTGGTCGCGTTGGGTGTCTC
ATATCTGATGCTGACCATGGTCATTCCCGAGTTTGAAAGCATGTTCAAAGGCTTTGGCGCAGAGCTCCCTTGGTTTACCC
AGCAAATTCTTAAACTCTCCCACGGCGTGCAAGCCTATAGCCTATGGGGTGTACTAGCGACCAGCGCTGGCCTATTGGCG
CTCAAAACCGCGCGCAATAAATCATTGGTCTTTCGATTAAAAACCAGCCGCCTTGGCTTGCGATTTCCTGTTGTCGGCGC
GGTATTAGCCAAGGCTGCCATTGCCAAATTCAGCCGCACATTGGCCACCAGTTTTAGCGCCGGTATACCAATTCTTGCCA
GTTTAAAAACCACCGCCAAAACCGCCGGCAACGTCCATTTTGAAACCGCGATTCAGGAGGTACATCGCCATACCGCGGCA
GGCATGCCGATGTACATCGCCATGCGCAATACCGACGCATTTCCGGAGATGGTGCTGCAAATGGTGATGATTGGCGAAGA
GTCGGGCAAGCTTGACGACATGCTGAACAAAGTCGCGACCATTTATGAGTTTGAAGTCGACAATACCGTGGACAATCTGG
GTAAAATTCTCGAGCCGCTGATCATCGTCTTTCTGGGAGTGGTCGTTGGCGGGCTGGTGGTTGCGATGTACCTCCCCATC
TTTAACTTAATGAGTGTATTGGGTTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

84.559

100

0.846
  pilC Vibrio campbellii strain DS40M4

73.697

98.775

0.728
  pilC Pseudomonas stutzeri DSM 10701

42.716

99.265

0.424
  pilC Acinetobacter baumannii D1279779

41.422

100

0.414
  pilC Legionella pneumophila strain ERS1305867

41.855

97.794

0.409
  pilC Acinetobacter baylyi ADP1

40.441

100

0.404
  pilG Neisseria gonorrhoeae MS11

38.916

99.51

0.387
  pilG Neisseria meningitidis 44/76-A

38.67

99.51

0.385