Detailed information NTG0846728

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: QSU96_RS06745
• Genome accession: NZ_CP128200
• Coordinates: 1431463..1432884 (-)
• Length: 473 a.a.
• NCBI ID: WP_238810490.1
• Uniprot ID: -
• Organism: Vibrio furnissii strain VFBJ07
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1426463..1437884

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QSU96_RS06730 (QSU96_06730)	cdd	1429281..1430168 (-)	888	WP_055466761.1	cytidine deaminase	-
QSU96_RS06735 (QSU96_06735)	-	1430377..1431057 (-)	681	WP_286280513.1	LrgB family protein	-
QSU96_RS06740 (QSU96_06740)	-	1431048..1431422 (-)	375	WP_004726196.1	CidA/LrgA family protein	-
QSU96_RS06745 (QSU96_06745)	sbcB	1431463..1432884 (-)	1422	WP_238810490.1	exodeoxyribonuclease I	Machinery gene
QSU96_RS06750 (QSU96_06750)	-	1433048..1434433 (-)	1386	WP_143679099.1	L-cystine transporter	-
QSU96_RS06755 (QSU96_06755)	-	1434635..1435318 (-)	684	WP_286280518.1	NAD(P)H-binding protein	-
QSU96_RS06760 (QSU96_06760)	-	1435719..1436330 (+)	612	WP_206982140.1	flavin reductase family protein	-
QSU96_RS06765 (QSU96_06765)	cobT	1436344..1437372 (+)	1029	WP_286280522.1	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	-

Sequence

Protein

• Length: 473 a.a.
• Molecular weight: 54392.76 Da
• Isoelectric Point: 4.8928

>NTDB_id=846728 QSU96_RS06745 WP_238810490.1 1431463..1432884(-) (sbcB) [Vibrio furnissii strain VFBJ07]
MQQQQPTYFFFDYETWGTSPAKDRPSQFAGVRTDMEFNIIGEPLVIYCQLPSDYLPAPEAALITGIIPQKAMAQGLPEPE
FIAKIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFFDPYAWSWQNGNSRWDLLDVMRACHALRPEGVVWPENDEGFTS
FKLEHLSKANGIEHENAHDAMADVIATIELAKKVKAAQPKLFEYFFSMRHKRKLNELIDIVNMTPLMHVSGMLGRECQYT
SWIVPIAWHPTNQNAVIVVDLAKDPQPLLDLDVESLHARLYTRHDDLAPDELPVPVKLVHLNKCPILAPAKTLTAENAAT
IGIDRELCLANLARIRQSPDIREKLAALFSIEREFEASNDVDTQLYDGFFSPADKAAMEIIRSTNPELLGELDITFSDKR
IEPLLFRYRARNFPWTLDDEEQRRWANHCRDYYETHLPDYMLNLENLVHEHESDEKKIAILKSVYQYVEKLAS

Nucleotide

• Length: 1422 bp

>NTDB_id=846728 QSU96_RS06745 WP_238810490.1 1431463..1432884(-) (sbcB) [Vibrio furnissii strain VFBJ07]
ATGCAGCAACAGCAGCCCACTTATTTTTTCTTTGACTATGAGACGTGGGGCACCAGCCCGGCCAAAGACCGTCCGAGTCA
GTTTGCTGGTGTGCGCACAGACATGGAGTTCAATATCATCGGTGAGCCGTTGGTGATTTACTGCCAATTGCCATCGGATT
ACCTGCCGGCGCCAGAAGCCGCGCTGATTACTGGCATCATTCCGCAAAAAGCGATGGCGCAAGGGCTACCTGAGCCCGAA
TTCATCGCCAAGATTCACGCCGAGTTATCGACACCAAACACCACAAGCCTTGGGTACAACAGCATTCGTTTCGACGATGA
AGTCACCCGTTACACCTGTTATCGCAACTTCTTTGACCCGTATGCTTGGAGCTGGCAAAACGGCAACTCCCGCTGGGATT
TATTGGATGTGATGCGTGCATGCCACGCATTGCGCCCGGAAGGTGTGGTGTGGCCAGAAAACGACGAAGGGTTTACCAGC
TTTAAACTAGAGCATTTGTCAAAAGCCAACGGCATTGAGCACGAAAATGCGCACGATGCGATGGCGGATGTGATTGCGAC
GATTGAACTGGCGAAAAAAGTCAAAGCCGCGCAACCCAAGCTGTTTGAGTATTTCTTCTCGATGCGTCATAAACGCAAGC
TCAATGAGCTAATTGATATTGTCAACATGACGCCGCTGATGCATGTCTCTGGCATGCTGGGCCGTGAATGCCAATACACC
AGTTGGATTGTGCCGATTGCTTGGCACCCGACCAACCAAAACGCGGTCATTGTGGTGGATTTAGCCAAGGACCCGCAGCC
GCTGCTCGATTTGGATGTGGAATCACTGCACGCGCGTTTATACACTCGTCATGACGATTTAGCGCCGGATGAATTGCCTG
TGCCCGTCAAGCTGGTTCATCTCAACAAGTGTCCGATTCTGGCCCCGGCGAAAACGCTCACCGCCGAAAATGCCGCCACC
ATCGGCATCGACCGCGAACTGTGCTTGGCCAACTTGGCACGCATTCGTCAGTCTCCCGATATTCGCGAAAAACTGGCGGC
GCTGTTTAGCATTGAGCGCGAATTTGAAGCCTCGAACGATGTGGATACGCAGCTCTATGACGGGTTCTTCTCCCCTGCAG
ATAAAGCCGCGATGGAAATTATTCGTTCCACGAATCCTGAACTGCTCGGCGAGTTGGATATCACGTTCAGCGACAAACGC
ATTGAACCCCTGCTGTTTCGTTACCGTGCGCGCAACTTCCCGTGGACGCTCGACGACGAAGAGCAACGCCGCTGGGCGAA
CCATTGTCGCGATTACTACGAAACACATCTGCCTGATTACATGCTGAACCTGGAAAATCTGGTGCATGAACATGAAAGTG
ATGAAAAGAAAATCGCGATTCTCAAATCCGTTTACCAATACGTAGAGAAGCTAGCCTCTTAG

Domains

Predicted by InterproScan.

• Exonuclease C-terminal (Exonuc_X-T_C) (209-469)

• Exonuclease (RNase_T) (10-190)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	83.439	99.577	0.831