Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   QSU96_RS04320 Genome accession   NZ_CP128200
Coordinates   930017..931378 (+) Length   453 a.a.
NCBI ID   WP_086027297.1    Uniprot ID   -
Organism   Vibrio furnissii strain VFBJ07     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 925017..936378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSU96_RS04305 (QSU96_04305) - 926737..926982 (+) 246 WP_286280079.1 hypothetical protein -
  QSU96_RS04315 (QSU96_04315) uvrB 927700..929730 (+) 2031 WP_004726644.1 excinuclease ABC subunit UvrB -
  QSU96_RS04320 (QSU96_04320) luxO 930017..931378 (+) 1362 WP_086027297.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  QSU96_RS04325 (QSU96_04325) luxU 931385..931723 (+) 339 WP_004726642.1 quorum-sensing phosphorelay protein LuxU -
  QSU96_RS04330 (QSU96_04330) - 931712..932602 (-) 891 WP_154180902.1 YvcK family protein -
  QSU96_RS04335 (QSU96_04335) moaA 932912..933901 (+) 990 WP_014205522.1 GTP 3',8-cyclase MoaA -
  QSU96_RS04340 (QSU96_04340) moaB 933972..934484 (+) 513 WP_004726639.1 molybdenum cofactor biosynthesis protein B -
  QSU96_RS04345 (QSU96_04345) moaC 934494..934973 (+) 480 WP_004726638.1 cyclic pyranopterin monophosphate synthase MoaC -
  QSU96_RS04350 (QSU96_04350) moaD 934970..935215 (+) 246 WP_004726637.1 molybdopterin synthase sulfur carrier subunit -
  QSU96_RS04355 (QSU96_04355) moaE 935217..935672 (+) 456 WP_014205521.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 50359.61 Da        Isoelectric Point: 5.7310

>NTDB_id=846720 QSU96_RS04320 WP_086027297.1 930017..931378(+) (luxO) [Vibrio furnissii strain VFBJ07]
MVEDTASVAALYRSYLTPLEIDINIVGTGREAIESIAHREPDLILLDLRLPDMTGMDVLHAVKQRSPDVPVIFMTAHGSI
DTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKANKLKNETDNPGNQNYQGFIGSSQTMLAVYRTIDSAATSKASIFIT
GESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADGGTLFLDELCEMDLD
LQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRERGDDVIEIAYSLLG
YMSKEEGKGFVRLAPDVVERFKQYEWPGNVRQLQNVLRNVVVLNEGREIALTMLPPPLNQLSDSRINVPKASPAPVSVHE
IFPLWMTEKQAIEKAIEACDGNIPRAAGYLDVSPSTIYRKLQTWNEKVQEKEK

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=846720 QSU96_RS04320 WP_086027297.1 930017..931378(+) (luxO) [Vibrio furnissii strain VFBJ07]
ATGGTCGAAGATACGGCGTCGGTTGCGGCGTTGTATCGTTCGTACCTGACACCGCTCGAGATCGATATCAACATTGTCGG
AACGGGACGTGAAGCGATCGAGAGCATCGCCCATCGCGAGCCGGATCTGATCCTCCTCGATCTGCGCCTGCCAGACATGA
CGGGTATGGACGTGTTGCACGCGGTGAAACAGCGTTCACCGGATGTGCCGGTGATTTTTATGACGGCTCACGGCTCCATT
GATACCGCCGTCGAAGCCATGCGCCACGGCGCGCAAGATTTCCTCATCAAACCGTGCGAAGCCGACCGTTTGCGTGTGAC
GGTCAACAACGCCATTCGCAAGGCAAACAAACTCAAAAACGAGACCGACAATCCAGGTAATCAGAATTACCAAGGGTTCA
TTGGCAGCAGCCAGACCATGTTGGCGGTGTATCGCACTATCGACTCTGCGGCCACCAGTAAAGCGAGTATTTTCATTACC
GGCGAAAGTGGTACCGGCAAAGAGGTGTGCGCCGAAGCCATCCATGCGGCCAGCAAGCGCGGCGACAAGCCGTTCATTGC
CATTAACTGTGCGGCCATTCCCAAAGATCTGATTGAAAGTGAGCTGTTTGGTCACGTCAAAGGCGCGTTTACTGGCGCGG
CGACGGATCGTCAGGGCGCGGCAGAACTGGCAGATGGCGGCACCTTGTTCTTGGACGAGCTGTGTGAAATGGATTTGGAT
CTGCAAACCAAGCTGCTGCGCTTTATTCAGACCGGGACCTTCCAGAAAGTCGGATCGTCTAAAATGAAGAGTGTGGACGT
GCGTTTTGTGTGTGCGACCAACCGTGACCCTTGGAAAGAAGTGCAAGAAGGGCGTTTTCGTGAAGACTTGTATTACCGTC
TGTACGTGATTCCGTTGCATTTGCCCCCTTTGCGTGAGCGCGGCGATGATGTGATTGAAATCGCGTATTCACTACTAGGG
TACATGTCGAAAGAAGAAGGTAAAGGCTTTGTACGTTTGGCGCCAGATGTCGTGGAGCGCTTCAAACAGTACGAATGGCC
GGGGAACGTGCGCCAGCTGCAGAACGTGCTGCGCAACGTGGTGGTGCTTAATGAAGGGCGTGAAATTGCGCTGACCATGC
TGCCGCCACCGCTGAACCAATTGAGTGACTCACGCATCAATGTCCCGAAAGCCAGCCCGGCACCGGTGTCGGTGCATGAA
ATTTTCCCGTTATGGATGACAGAAAAGCAGGCGATCGAAAAAGCAATCGAGGCCTGTGATGGCAATATTCCGCGTGCTGC
GGGCTATTTGGATGTCAGTCCATCCACCATCTACCGCAAGCTGCAAACCTGGAATGAAAAGGTGCAGGAAAAGGAAAAGT
AA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(404-442)

Response regulator receiver domain (Response_reg)

(2-108)

Sigma-54 interaction domain (Sigma54_activat)

(134-299)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

90.828

98.675

0.896