Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   QSU96_RS02375 Genome accession   NZ_CP128200
Coordinates   490105..490623 (+) Length   172 a.a.
NCBI ID   WP_286279836.1    Uniprot ID   -
Organism   Vibrio furnissii strain VFBJ07     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 485105..495623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSU96_RS02365 (QSU96_02365) gshA 487907..489472 (+) 1566 WP_286279834.1 glutamate--cysteine ligase -
  QSU96_RS02370 (QSU96_02370) - 489474..490079 (+) 606 WP_286279835.1 hypothetical protein -
  QSU96_RS02375 (QSU96_02375) luxS 490105..490623 (+) 519 WP_286279836.1 S-ribosylhomocysteine lyase Regulator
  QSU96_RS02380 (QSU96_02380) - 490730..492004 (-) 1275 WP_004723872.1 HlyC/CorC family transporter -
  QSU96_RS02385 (QSU96_02385) - 492095..492889 (-) 795 WP_286279837.1 inner membrane protein YpjD -
  QSU96_RS02390 (QSU96_02390) ffh 493102..494481 (+) 1380 WP_004723876.1 signal recognition particle protein -
  QSU96_RS02395 (QSU96_02395) rpsP 494707..494955 (+) 249 WP_004723879.1 30S ribosomal protein S16 -
  QSU96_RS02400 (QSU96_02400) rimM 494983..495537 (+) 555 WP_004723882.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18886.62 Da        Isoelectric Point: 4.6766

>NTDB_id=846717 QSU96_RS02375 WP_286279836.1 490105..490623(+) (luxS) [Vibrio furnissii strain VFBJ07]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTMPNKDILSEKGIHTLEHLYAGFMRAHLNGANVEIIDISP
MGCRTGFYMSLIGAPSEEQVATAWLASMQDVLSVESQDQIPELNEYQCGTAAMHSLNEAKAIAETVIAAGIQVNKNDELA
LPESMLNELKVH

Nucleotide


Download         Length: 519 bp        

>NTDB_id=846717 QSU96_RS02375 WP_286279836.1 490105..490623(+) (luxS) [Vibrio furnissii strain VFBJ07]
ATGCCATTATTAGACAGTTTTACCGTCGACCACACTCGCATGAACGCACCGGCTGTGCGTGTTGCGAAAACCATGCAAAC
GCCGAAAGGCGACACCATTACGGTGTTTGACCTGCGTTTCACCATGCCAAACAAAGACATTCTGTCCGAGAAAGGGATTC
ATACGCTGGAGCATCTGTACGCTGGCTTTATGCGTGCGCACCTCAATGGCGCGAACGTGGAAATTATCGACATCTCGCCG
ATGGGATGTCGCACCGGGTTTTACATGAGCCTGATTGGTGCGCCAAGCGAAGAGCAAGTCGCCACCGCTTGGTTGGCGTC
GATGCAAGACGTATTGAGTGTCGAAAGTCAGGATCAAATTCCTGAGCTGAACGAATACCAGTGCGGCACCGCAGCGATGC
ACTCCCTGAATGAAGCCAAAGCGATTGCTGAAACCGTGATTGCCGCAGGCATTCAGGTCAATAAGAACGATGAACTGGCG
CTGCCCGAATCGATGCTCAATGAGCTGAAAGTGCACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

91.279

100

0.913