Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   P3L48_RS20250 Genome accession   NZ_CP128196
Coordinates   4067644..4068399 (-) Length   251 a.a.
NCBI ID   WP_286229280.1    Uniprot ID   -
Organism   Neobacillus mesonae strain NS-6     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4062644..4073399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3L48_RS20225 - 4063019..4063591 (-) 573 WP_286229275.1 Maf family protein -
  P3L48_RS20230 - 4063830..4064918 (-) 1089 WP_286229276.1 SPOR domain-containing protein -
  P3L48_RS20235 - 4065054..4065830 (-) 777 WP_286229277.1 pilus assembly protein PilO -
  P3L48_RS20240 - 4065827..4066642 (-) 816 WP_286229278.1 hypothetical protein -
  P3L48_RS20245 pilM 4066639..4067631 (-) 993 WP_286229279.1 pilus assembly protein PilM -
  P3L48_RS20250 comC 4067644..4068399 (-) 756 WP_286229280.1 A24 family peptidase Machinery gene
  P3L48_RS20255 - 4068399..4068803 (-) 405 WP_286229281.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  P3L48_RS20260 - 4068947..4070152 (-) 1206 WP_286229282.1 type II secretion system F family protein -
  P3L48_RS20265 - 4070145..4071194 (-) 1050 WP_286229283.1 type IV pilus twitching motility protein PilT -
  P3L48_RS20270 - 4071207..4072868 (-) 1662 WP_286229284.1 ATPase, T2SS/T4P/T4SS family -

Sequence

Protein


Download         Length: 251 a.a.        Molecular weight: 27877.90 Da        Isoelectric Point: 9.6279

>NTDB_id=846684 P3L48_RS20250 WP_286229280.1 4067644..4068399(-) (comC) [Neobacillus mesonae strain NS-6]
MLNILLMIYGLLLGSFFNVVGIRIPQKKSIVTPRSACPTCGHQLKPYELLPVLSYIFQNGKCRGCKSRISPIYPIFELLT
GILFAAAPYFVGWSGELLVALTLISMFMIITVSDIHYMIIPDKILIWFAGIFLLERIIWPLTPWWDSLLGAVIGFILLLI
IAIVSKGGMGFGDVKLYALLGLVLGTKLVLLSFFFSTLFGAVIGGLALLLKIVKRKQPIPFGPFIAAGTLTAYFWGSEII
YLYIQFLQGFD

Nucleotide


Download         Length: 756 bp        

>NTDB_id=846684 P3L48_RS20250 WP_286229280.1 4067644..4068399(-) (comC) [Neobacillus mesonae strain NS-6]
ATGCTTAACATCTTATTAATGATATATGGTTTACTTCTAGGGTCATTTTTTAACGTAGTTGGCATACGAATACCACAAAA
GAAATCGATTGTAACACCAAGATCAGCATGTCCGACTTGTGGTCATCAATTAAAACCATATGAACTATTACCGGTTTTAT
CTTATATTTTTCAAAATGGAAAATGCCGCGGCTGTAAGTCGCGGATTTCCCCTATCTATCCAATTTTTGAATTGTTAACG
GGAATCTTGTTTGCAGCAGCACCATACTTTGTCGGATGGTCAGGAGAATTATTAGTAGCCTTAACGCTAATATCCATGTT
TATGATTATCACAGTTTCAGATATTCACTATATGATCATCCCTGATAAAATTTTAATTTGGTTTGCAGGGATTTTTTTAT
TGGAACGAATTATTTGGCCGCTCACCCCTTGGTGGGATAGCCTTTTAGGAGCAGTCATTGGTTTTATCCTGCTGCTAATC
ATCGCCATCGTCAGCAAAGGCGGAATGGGTTTTGGTGATGTGAAACTTTACGCTTTACTAGGCTTGGTACTTGGTACTAA
ACTAGTATTGTTATCCTTCTTTTTTTCAACACTATTTGGAGCTGTCATCGGTGGGCTTGCCTTACTTTTGAAAATCGTCA
AACGGAAGCAGCCGATTCCATTTGGACCGTTTATCGCGGCTGGAACGTTAACAGCTTATTTTTGGGGATCGGAAATAATT
TATCTTTATATACAATTCCTTCAAGGATTTGACTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(102-204)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

48.996

99.203

0.486