Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   P3L48_RS18925 Genome accession   NZ_CP128196
Coordinates   3820336..3822024 (-) Length   562 a.a.
NCBI ID   WP_286229095.1    Uniprot ID   -
Organism   Neobacillus mesonae strain NS-6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3815336..3827024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3L48_RS18905 - 3816637..3816885 (+) 249 WP_066385289.1 DUF2627 domain-containing protein -
  P3L48_RS18910 - 3816897..3817625 (-) 729 WP_286229093.1 glycerophosphodiester phosphodiesterase -
  P3L48_RS18915 spo0A 3817840..3818634 (-) 795 WP_066385296.1 sporulation transcription factor Spo0A -
  P3L48_RS18920 spoIVB 3818927..3820213 (-) 1287 WP_286229094.1 SpoIVB peptidase -
  P3L48_RS18925 recN 3820336..3822024 (-) 1689 WP_286229095.1 DNA repair protein RecN Machinery gene
  P3L48_RS18930 argR 3822041..3822490 (-) 450 WP_066385299.1 transcriptional regulator ArgR -
  P3L48_RS18935 - 3822625..3823461 (-) 837 WP_286229096.1 TlyA family RNA methyltransferase -
  P3L48_RS18940 dxs 3823465..3825360 (-) 1896 WP_286232346.1 1-deoxy-D-xylulose-5-phosphate synthase -
  P3L48_RS18945 - 3825600..3826493 (-) 894 WP_286229097.1 polyprenyl synthetase family protein -
  P3L48_RS18950 - 3826497..3826730 (-) 234 WP_066385312.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 562 a.a.        Molecular weight: 63359.25 Da        Isoelectric Point: 5.1483

>NTDB_id=846676 P3L48_RS18925 WP_286229095.1 3820336..3822024(-) (recN) [Neobacillus mesonae strain NS-6]
MLAELSIKNFAIIENLSISFEKGLSVLTGETGAGKSIIIDAIHLLTGGRGSAEFVRHGKDKAEIEGLFQIDETGHPVYKK
ALGFGIEIEEGMVVLRRDISRTGKSVCRINGKLVTIAVLREIGAALVDIHGQHEHQELMDETRHLPLLDQFGAEEIAASM
EEYRQVFHRFEQTQNRLKALSENDQQMAHRLDLILFQFDEIQKADLKLHEDEELYEEKQKLSNFEKTYEALQLSFNALHG
DQKGLDWVGMVMGHLEDAAAIDGAYKEISEAVANCFYQLEDAARTLRNELDVLEFDPQRLNEIEDRLNEINQLKRKYGKT
IQEILEYAAKIEEEIETIQNKETHIDELEKEIASIKKDLTLEAKQLTALRQKWAEKLTGLIHKELKELYMEKTVFNIQIT
SENDHFSKYGADHVEFYISTNPGEPLKPLSKVASGGELSRIMLALKSIFSKHQGVTSIIFDEVDTGVSGRVAQAIAEKIY
KVALDSQVLCISHLPQVAAMADTHLFISKTVKDGRTSTAVTPLTDQEKIKEIGRMISGVEITDLTKQHAQELLQLAVKTK
KN

Nucleotide


Download         Length: 1689 bp        

>NTDB_id=846676 P3L48_RS18925 WP_286229095.1 3820336..3822024(-) (recN) [Neobacillus mesonae strain NS-6]
TTGCTAGCTGAACTTTCAATCAAAAACTTTGCAATTATCGAAAACCTGTCAATCTCCTTTGAAAAAGGTCTTTCGGTTCT
GACTGGAGAAACCGGAGCGGGAAAGTCCATAATCATCGATGCGATTCATTTATTGACAGGTGGCAGGGGGTCGGCTGAGT
TTGTACGACATGGTAAAGATAAGGCAGAGATAGAAGGTTTATTTCAAATTGATGAGACTGGTCATCCCGTGTATAAGAAA
GCATTGGGATTTGGTATTGAAATAGAAGAAGGTATGGTTGTATTACGTCGTGATATTTCCCGCACCGGAAAAAGCGTATG
CCGCATAAATGGGAAATTAGTTACGATAGCGGTGCTTCGAGAAATAGGTGCGGCCCTTGTTGATATTCACGGCCAGCATG
AACACCAGGAACTAATGGATGAAACACGACATCTTCCATTGCTCGACCAATTTGGTGCTGAAGAGATTGCCGCATCAATG
GAAGAATACCGCCAAGTCTTTCACCGGTTTGAACAAACGCAAAATAGGCTTAAGGCTCTAAGTGAAAATGACCAGCAAAT
GGCTCATAGGCTAGATTTAATTTTATTTCAGTTTGACGAAATTCAAAAAGCGGATTTAAAGCTGCATGAGGATGAGGAGC
TTTATGAAGAAAAGCAGAAACTGTCTAATTTCGAAAAAACTTATGAAGCACTTCAATTAAGTTTTAACGCCTTGCACGGG
GACCAAAAAGGGCTTGACTGGGTCGGGATGGTCATGGGGCATTTAGAGGATGCGGCTGCAATAGACGGGGCATATAAGGA
AATCTCTGAAGCGGTAGCCAATTGCTTTTATCAGTTAGAGGATGCGGCAAGGACGCTAAGAAATGAATTAGACGTTTTGG
AATTTGATCCGCAAAGATTAAATGAAATAGAAGACCGTTTGAATGAAATTAATCAATTAAAACGGAAATATGGGAAAACG
ATTCAGGAAATATTGGAATATGCAGCCAAAATTGAAGAAGAAATTGAGACGATTCAAAATAAAGAAACGCATATCGATGA
GTTGGAAAAAGAAATAGCTTCCATTAAAAAGGATTTAACCCTCGAGGCGAAACAGTTGACAGCACTTCGCCAAAAATGGG
CAGAAAAGCTCACAGGGCTGATACATAAAGAATTAAAAGAATTGTACATGGAAAAAACGGTTTTTAATATTCAAATTACA
TCAGAGAATGACCATTTTTCTAAATATGGGGCGGATCATGTGGAGTTTTATATTTCCACCAATCCTGGTGAACCTCTAAA
ACCTTTATCGAAAGTGGCGTCAGGCGGTGAATTGTCGCGGATTATGCTGGCGTTAAAAAGTATTTTTTCCAAGCATCAAG
GAGTTACCTCAATTATTTTTGATGAGGTGGATACTGGGGTAAGCGGCAGGGTTGCCCAAGCGATTGCTGAAAAAATTTAT
AAAGTAGCACTCGATTCACAAGTATTATGTATTTCACATTTGCCTCAAGTAGCGGCAATGGCCGATACTCATTTGTTTAT
TTCTAAGACAGTCAAAGATGGCCGGACTTCAACTGCGGTTACACCGTTAACCGATCAAGAAAAAATTAAAGAAATCGGGC
GAATGATTTCCGGAGTGGAAATAACCGATTTAACCAAGCAGCATGCTCAGGAATTATTGCAATTAGCAGTAAAAACTAAA
AAAAATTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

61.324

100

0.626