Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   P3L48_RS07920 Genome accession   NZ_CP128196
Coordinates   1687997..1689820 (+) Length   607 a.a.
NCBI ID   WP_286231255.1    Uniprot ID   -
Organism   Neobacillus mesonae strain NS-6     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1682997..1694820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3L48_RS07900 spxA 1683578..1683973 (+) 396 WP_066395071.1 transcriptional regulator SpxA -
  P3L48_RS07905 mecA 1684318..1684983 (+) 666 WP_066395073.1 adaptor protein MecA -
  P3L48_RS07910 cls 1685058..1686569 (+) 1512 WP_066395074.1 cardiolipin synthase -
  P3L48_RS07915 - 1686654..1687856 (+) 1203 WP_286231254.1 competence protein CoiA family protein -
  P3L48_RS07920 pepF 1687997..1689820 (+) 1824 WP_286231255.1 oligoendopeptidase F Regulator
  P3L48_RS07925 - 1690581..1691465 (-) 885 WP_286231256.1 ClpXP adapter SpxH family protein -
  P3L48_RS07930 - 1691446..1691859 (-) 414 WP_066395088.1 globin -
  P3L48_RS07935 - 1692035..1692625 (-) 591 WP_286231257.1 CYTH domain-containing protein -
  P3L48_RS07940 - 1692732..1693091 (+) 360 WP_066395098.1 hypothetical protein -
  P3L48_RS07945 - 1693113..1693751 (+) 639 WP_066395100.1 GTP pyrophosphokinase family protein -
  P3L48_RS07950 - 1693792..1694586 (+) 795 WP_066395102.1 NAD kinase -

Sequence

Protein


Download         Length: 607 a.a.        Molecular weight: 69743.25 Da        Isoelectric Point: 4.8652

>NTDB_id=846665 P3L48_RS07920 WP_286231255.1 1687997..1689820(+) (pepF) [Neobacillus mesonae strain NS-6]
MTNESAVKSLPARSELPAQDTWKLEDIFANDEEWEKEFQAVKGLIPGIKEYEGKLGESADTFYKALQCEDQLLERIGKLY
TYSHMRYDQDTTNSFYQGLDDRMKNLYSQAASALAFIVPEILSIDESKVSSFLNEKPELKLYEHALEEINLQRPHVLSAE
QEALLAEAGEVMDASSNTFGMLNNADLEFPSIKDENGEEVEITHGRYIRFLESSDQRVRHDAFKAVYQTYGKFKNTFSST
LSGNVKKNNFNARVRKYDSARHAALSANNIPESVYDNLVNTVNENLHLLHRYVKLRKKVLGLNELHMYDLYTPLVKDVKM
EIKYEEAKDLVLKGLVPLGEEYAKVLQEGFENRWVDVHENKGKRSGAYSSGAFGTNPYILMNWQDNVNNLFTLAHEFGHS
VHSYYTRKSQPYPYGNYSIFVAEVASTCNEALLNDYLLKTIDDEQKRIYLLNHYLEGFRGTVFRQTMFAEFEHLIHQKAQ
NNEALTADSLTEIYYELNKKYFGEEDIVIDEEIGLEWARIPHFYYNYYVYQYATGFSAATALSKQILEEGEPAVKRYIDF
LSAGSSDYPIEVLKKAGVDMTSADPVKNALKVFEEKLGELEQLLVHQ

Nucleotide


Download         Length: 1824 bp        

>NTDB_id=846665 P3L48_RS07920 WP_286231255.1 1687997..1689820(+) (pepF) [Neobacillus mesonae strain NS-6]
ATGACAAATGAATCGGCTGTAAAGTCACTACCGGCACGAAGTGAACTTCCCGCCCAGGATACTTGGAAATTAGAGGATAT
TTTTGCTAACGATGAAGAATGGGAAAAAGAATTTCAAGCAGTAAAAGGTCTAATCCCGGGAATTAAGGAATATGAAGGGA
AACTCGGTGAAAGCGCAGATACATTTTATAAGGCGTTACAGTGTGAAGACCAGCTGCTTGAGCGTATTGGCAAGCTATAT
ACATATTCACATATGAGATATGACCAGGATACCACCAATTCCTTTTACCAAGGCTTAGATGACCGGATGAAAAATCTTTA
TTCGCAGGCTGCCAGCGCGTTAGCCTTTATCGTTCCGGAAATACTCTCGATTGATGAAAGTAAGGTTTCCAGCTTTTTGA
ATGAAAAGCCGGAATTAAAGCTTTATGAGCATGCTCTTGAGGAAATTAATCTCCAGCGGCCGCATGTCTTAAGTGCTGAG
CAGGAAGCACTTCTAGCGGAAGCAGGCGAAGTAATGGATGCCTCCAGCAACACGTTTGGGATGCTCAATAATGCGGATTT
GGAGTTTCCCTCCATAAAGGATGAAAACGGTGAAGAGGTGGAAATTACCCACGGACGTTATATCCGCTTCCTGGAAAGTA
GTGATCAACGGGTCCGTCATGATGCCTTTAAAGCTGTTTATCAAACATATGGAAAGTTTAAAAACACGTTTTCAAGTACT
TTAAGCGGCAATGTTAAAAAGAATAATTTCAATGCAAGAGTACGGAAATACGACTCAGCCAGACATGCAGCACTATCGGC
GAATAATATTCCAGAAAGCGTCTATGACAACCTTGTAAATACGGTTAATGAAAACCTGCATTTACTGCACCGCTATGTGA
AGCTGCGGAAAAAAGTTTTAGGGTTAAACGAATTGCATATGTACGATTTATACACACCACTGGTAAAAGACGTAAAGATG
GAAATTAAGTATGAAGAAGCAAAAGATTTGGTCCTTAAAGGCCTGGTTCCATTAGGAGAAGAATATGCAAAGGTTCTACA
AGAAGGGTTTGAAAACCGCTGGGTAGATGTTCATGAAAATAAAGGAAAGCGCAGCGGGGCGTATTCTTCAGGGGCTTTCG
GCACCAACCCATATATCTTAATGAACTGGCAGGATAATGTTAATAATTTATTTACACTTGCACATGAATTCGGCCACTCA
GTTCATAGCTACTATACACGAAAATCACAGCCATATCCGTATGGAAATTATTCCATATTTGTTGCGGAAGTTGCTTCAAC
TTGCAATGAAGCTTTGCTAAATGATTACTTATTAAAAACAATAGATGACGAGCAGAAGCGGATTTATCTTTTAAACCATT
ATTTAGAAGGCTTCCGCGGCACGGTGTTCCGTCAAACTATGTTTGCTGAATTTGAACATTTAATTCATCAAAAAGCCCAA
AACAACGAAGCGTTAACAGCTGACTCGTTAACAGAAATTTATTATGAGTTAAATAAAAAGTACTTCGGTGAAGAGGATAT
TGTAATTGATGAGGAAATCGGCTTGGAATGGGCACGAATTCCGCATTTCTATTACAATTATTATGTATACCAATATGCTA
CAGGCTTTAGTGCAGCCACTGCATTAAGCAAGCAAATCTTGGAAGAAGGCGAACCGGCAGTCAAACGCTATATAGACTTT
CTAAGTGCCGGAAGCTCAGATTATCCGATTGAAGTTCTGAAAAAAGCAGGCGTGGATATGACCAGCGCCGACCCAGTTAA
AAATGCATTGAAGGTGTTTGAAGAAAAACTTGGGGAATTGGAACAATTATTAGTACATCAATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(211-590)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50

97.858

0.489