Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   K1T30_RS00505 Genome accession   NZ_CP128186
Coordinates   135852..137603 (+) Length   583 a.a.
NCBI ID   WP_284941349.1    Uniprot ID   -
Organism   Bifidobacterium catenulatum strain IMAUFB087     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 130852..142603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K1T30_RS00475 (K1T30_000475) - 131276..132073 (+) 798 WP_284941408.1 ABC transporter ATP-binding protein -
  K1T30_RS00480 (K1T30_000480) - 132130..132687 (+) 558 WP_080788085.1 FMN-binding protein -
  K1T30_RS00485 (K1T30_000485) - 132825..133478 (-) 654 WP_284940805.1 TetR/AcrR family transcriptional regulator -
  K1T30_RS00490 (K1T30_000490) - 133475..134263 (-) 789 Protein_93 YhgE/Pip family protein -
  K1T30_RS00495 (K1T30_000495) - 134283..134933 (+) 651 WP_301436306.1 peptidoglycan bridge formation glycyltransferase FemA/FemB family protein -
  K1T30_RS00500 (K1T30_000500) - 135261..135752 (+) 492 WP_004223035.1 MarR family transcriptional regulator -
  K1T30_RS00505 (K1T30_000505) rcrP 135852..137603 (+) 1752 WP_284941349.1 ABC transporter ATP-binding protein Regulator
  K1T30_RS00510 (K1T30_000510) rcrQ 137618..139462 (+) 1845 WP_284941348.1 ABC transporter ATP-binding protein Regulator
  K1T30_RS00515 (K1T30_000515) - 139523..140584 (-) 1062 WP_284941347.1 FAD:protein FMN transferase -

Sequence

Protein


Download         Length: 583 a.a.        Molecular weight: 64408.52 Da        Isoelectric Point: 5.0959

>NTDB_id=846568 K1T30_RS00505 WP_284941349.1 135852..137603(+) (rcrP) [Bifidobacterium catenulatum strain IMAUFB087]
MLRIVRYLSKAEIVQMLIALVSIVGQIWFDLTLPDYMADITQLVETPGSEMSDIWIAGGKMLLVSLGSVACAVVTGFIAA
RVGASFSQRLRSLEFKKVESFGPAEMNRFSTASLITRSTNDITQIQMFVTMGLMMLIKAPIMAVWAVCKIANKGLEWTFA
TGIAVAVLLAVIGVIMSFVMPKFKAMQRLTDNINLVARENLTGLRVVRAYNAEEYQEDKFTEANKELTETQLFTNRSMAI
MMPLMNTVMNGLMLAVYWIGAYLIDAAEALDKLTTFSNMVVFSSYSIQVIMSFLLLSMVFVLWPRADVSAQRVLEVIDTD
PMVADGVKTAGKPGMEGEIEFRNVSFAYPDSRQAMLEGVNFTAKKGETVAFIGSTGSGKSSLINLVPRFYDATQGEVLVD
GVDVRDYTLKALRDKIGYVPQQSFLFKGTIASNVAYGDTERNDADVKTACDVAQATEFIDKKDKKYDSGIAQGGSNVSGG
QKQRLSIARAVYRHPEILIFDDSFSALDFKTDRAVRDALEREAKNSTKLIVAQRIGTIMNADRIIVLDDGKVVGQGTHHE
LLDNCEVYRQIAESQLSEDELNR

Nucleotide


Download         Length: 1752 bp        

>NTDB_id=846568 K1T30_RS00505 WP_284941349.1 135852..137603(+) (rcrP) [Bifidobacterium catenulatum strain IMAUFB087]
ATGCTTCGCATTGTGCGATACCTCTCCAAAGCGGAGATAGTCCAGATGCTCATTGCACTGGTCAGCATCGTCGGTCAGAT
CTGGTTCGATCTGACGCTGCCGGATTACATGGCCGACATCACGCAGCTCGTGGAAACGCCGGGCAGTGAAATGAGTGATA
TCTGGATAGCGGGCGGCAAAATGCTGCTCGTCTCGCTCGGATCGGTGGCGTGCGCGGTCGTCACCGGCTTCATCGCCGCG
CGCGTCGGCGCGTCGTTCAGCCAACGTCTGCGCTCGCTCGAATTCAAGAAGGTGGAAAGCTTCGGACCGGCGGAAATGAA
CCGTTTCTCCACCGCATCGCTCATCACCCGCTCCACGAACGACATCACGCAGATCCAGATGTTCGTGACCATGGGTCTGA
TGATGCTGATCAAAGCGCCGATCATGGCCGTGTGGGCCGTATGCAAAATCGCGAACAAAGGCCTTGAATGGACGTTCGCC
ACTGGCATCGCAGTAGCCGTGCTGCTGGCGGTGATCGGCGTGATCATGAGCTTCGTCATGCCGAAGTTCAAGGCCATGCA
GCGCCTGACCGACAATATCAACCTCGTGGCGCGCGAGAACCTCACCGGCCTGCGCGTGGTGCGCGCATACAACGCCGAGG
AGTACCAGGAAGACAAGTTCACCGAAGCCAACAAGGAACTCACCGAGACCCAGCTGTTCACCAACCGCTCCATGGCCATC
ATGATGCCGTTGATGAACACCGTCATGAACGGTCTGATGCTGGCCGTCTACTGGATCGGCGCCTACCTCATCGACGCCGC
CGAAGCGCTCGACAAGCTCACCACCTTCTCCAACATGGTGGTGTTCTCCAGCTACTCCATCCAGGTGATCATGAGCTTCC
TGCTGCTGAGCATGGTGTTCGTGCTCTGGCCGCGCGCCGATGTGTCCGCGCAGCGCGTGCTCGAAGTCATCGACACCGAT
CCGATGGTCGCCGACGGTGTGAAGACTGCCGGCAAGCCTGGCATGGAAGGCGAAATCGAATTCCGCAACGTGAGCTTCGC
CTACCCCGATTCTCGTCAAGCTATGTTGGAAGGCGTCAATTTCACAGCCAAGAAGGGCGAAACGGTCGCGTTCATTGGCT
CGACCGGCTCCGGAAAATCGTCTCTCATCAACCTCGTGCCGCGCTTTTACGACGCGACGCAAGGCGAGGTTCTCGTCGAC
GGCGTTGACGTGCGCGACTACACGCTCAAGGCGTTGCGTGACAAGATCGGCTACGTGCCGCAGCAGTCGTTCCTGTTCAA
AGGCACGATCGCCAGCAATGTCGCGTACGGAGATACGGAACGCAACGACGCCGACGTGAAGACGGCATGCGATGTCGCGC
AGGCCACGGAATTCATCGACAAGAAGGACAAGAAATACGATTCCGGCATTGCGCAGGGTGGTTCCAACGTGTCGGGTGGG
CAGAAACAGCGCCTGTCGATCGCACGCGCCGTTTACCGTCATCCGGAAATCCTGATTTTCGACGACTCCTTCTCCGCGCT
TGATTTCAAGACCGATCGCGCCGTACGCGATGCGCTCGAACGGGAAGCGAAGAATTCCACGAAACTCATCGTCGCTCAGC
GCATCGGCACCATTATGAACGCCGACCGCATCATCGTGCTCGACGATGGCAAAGTCGTTGGCCAAGGTACGCACCACGAA
CTGCTCGACAACTGCGAAGTATACCGGCAGATCGCCGAATCGCAGTTGAGCGAAGACGAGTTGAATCGCTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(17-293)

ABC transporter (ABC_tran)

(356-503)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

50

100

0.511