Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   QRA13_RS19655 Genome accession   NZ_CP128184
Coordinates   3976815..3977582 (+) Length   255 a.a.
NCBI ID   WP_044802539.1    Uniprot ID   -
Organism   Bacillus velezensis strain YJ0-1 isolate soil     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 3971815..3982582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRA13_RS19625 (QRA13_19625) - 3972098..3974230 (+) 2133 WP_007408284.1 HD family phosphohydrolase -
  QRA13_RS19630 (QRA13_19630) ybeY 3974231..3974704 (+) 474 WP_003152973.1 rRNA maturation RNase YbeY -
  QRA13_RS19635 (QRA13_19635) - 3974685..3975059 (+) 375 WP_003152974.1 diacylglycerol kinase family protein -
  QRA13_RS19640 (QRA13_19640) - 3975183..3975593 (+) 411 WP_003152976.1 cytidine deaminase -
  QRA13_RS19645 (QRA13_19645) era 3975574..3976479 (+) 906 WP_007408285.1 GTPase Era -
  QRA13_RS19650 (QRA13_19650) - 3976635..3976778 (+) 144 WP_007408286.1 YqzL family protein -
  QRA13_RS19655 (QRA13_19655) recO 3976815..3977582 (+) 768 WP_044802539.1 DNA repair protein RecO Machinery gene
  QRA13_RS19660 (QRA13_19660) glyQ 3977884..3978771 (+) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  QRA13_RS19665 (QRA13_19665) glyS 3978764..3980803 (+) 2040 WP_224223679.1 glycine--tRNA ligase subunit beta -
  QRA13_RS19670 (QRA13_19670) ccpN 3980904..3981542 (+) 639 WP_003152989.1 transcriptional regulator CcpN -
  QRA13_RS19675 (QRA13_19675) - 3981568..3982380 (+) 813 WP_003152991.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29292.91 Da        Isoelectric Point: 8.5625

>NTDB_id=846539 QRA13_RS19655 WP_044802539.1 3976815..3977582(+) (recO) [Bacillus velezensis strain YJ0-1 isolate soil]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNELKRVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=846539 QRA13_RS19655 WP_044802539.1 3976815..3977582(+) (recO) [Bacillus velezensis strain YJ0-1 isolate soil]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGGTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAACGAACTTAAACGGGTCATTGATCTGTATTACGAGGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GATCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.412

100

0.894